Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J10
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.40 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.53 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   0.92 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   4.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +3

Query: 153 KWFNNNPSAASTTWRRRQAGAAPTXRTAQLCRESRHCTAPXRSTAQETYNTYNTG 317
           +W NN PS ++  W       +          ++R+ T+  R+  + + N+ N+G
Sbjct: 363 QWRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTS-SRAQGETSRNSKNSG 416



 Score = 24.6 bits (51), Expect = 0.53
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 147 NGKWFNNNPSAASTTWRR 200
           N +W NNN + ++  WR+
Sbjct: 373 NNRWHNNNGNNSNNHWRK 390


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 174 SAASTTWRRRQAGAAPTXRTAQLCRESRHCTAPXRSTAQETYNTYNTGPFY 326
           SA S+ W      +    +    C  S+    P  ST   T N YN  P+Y
Sbjct: 213 SANSSIWSPASIDSFTLEQHRSWCSSSQ----PVLSTTNSTTNCYNNYPYY 259


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 382 SIPAPESPRDPRDDEQSEDDENEPPLAIP 468
           S+   ++  DP DD+  + D +E  L +P
Sbjct: 226 SLEDDDNISDPEDDDDKDQDMDEGDLPLP 254



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 403 PRDPRDDEQSEDDENEPPLAIPG 471
           P D  D +Q  D+ + P  A PG
Sbjct: 236 PEDDDDKDQDMDEGDLPLPAAPG 258


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 115 LPPELSELRALTASGLTITPAQPPPHGAGGKRVLRPRXEQRSYA-ESPDIVLLPXAPPHR 291
           +PP   + +   + GLT  P  P P G     +L P   Q + +  +P +  L      R
Sbjct: 144 IPPYQLDSKTAGSMGLTRPPMYPFPAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFR 203

Query: 292 KP 297
            P
Sbjct: 204 SP 205



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 370 TPSVSIPAPESPRDPRDDEQSEDDENEPP 456
           +PSVS+ +P   + P    ++ D +  PP
Sbjct: 710 SPSVSVASPYMLQSPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 115 LPPELSELRALTASGLTITPAQPPPHGAGGKRVLRPRXEQRSYA-ESPDIVLLPXAPPHR 291
           +PP   + +   + GLT  P  P P G     +L P   Q + +  +P +  L      R
Sbjct: 36  IPPYQLDSKTAGSMGLTRPPMYPFPAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFR 95

Query: 292 KP 297
            P
Sbjct: 96  SP 97



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 370 TPSVSIPAPESPRDPRDDEQSEDDENEPP 456
           +PSVS+ +P   + P    ++ D +  PP
Sbjct: 602 SPSVSVASPYMLQSPLTPHEAFDVKLPPP 630


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 118 PPELSELRALTASGLTITPAQPPP 189
           P   S    +++SG+T   A PPP
Sbjct: 13  PAPQSAATPISSSGMTSPAAAPPP 36


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
           V++  +A+         G+ LTL  T   S ++F +   ETL
Sbjct: 223 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 264


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
           V++  +A+         G+ LTL  T   S ++F +   ETL
Sbjct: 223 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 264


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
           V++  +A+         G+ LTL  T   S ++F +   ETL
Sbjct: 223 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 264


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 118  PPELSELRALTASGLTITPAQPPPHGAGG 204
            PP+ +    LTA  + ++   PP   A G
Sbjct: 1103 PPDKATCTTLTAQTIRVSWVSPPLTAANG 1131



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 367  ITPSVSIPAPESPRDPRDDEQSEDDENEPPLAI 465
            ++PS S+PA  +  D       ++D   P LA+
Sbjct: 1299 VSPSASVPAKIASFDDTFTTTYKEDVTLPCLAV 1331


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 258 VGTLCIAALFXTWAQ 214
           +G LCI ++F  W Q
Sbjct: 52  IGCLCIWSIFNKWNQ 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,929
Number of Sequences: 336
Number of extensions: 2549
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)