Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J10
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.033
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   2.9  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   5.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   5.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   6.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   6.7  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    25   8.9  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.033
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = +1

Query: 118 PPELSELRALTASGLTITPAQPPPHGAGGKRVLRPRXEQRSYAESPDIVLLPXAPPHRKP 297
           PP LS  RA++       P  PPP   G      P     S   +P +   P  PP   P
Sbjct: 376 PPPLSSSRAVS------NPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429

Query: 298 TIPTTPAP 321
           ++P +  P
Sbjct: 430 SLPPSAPP 437


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 29/124 (23%), Positives = 38/124 (30%), Gaps = 1/124 (0%)
 Frame = +1

Query: 118  PPELSEL-RALTASGLTITPAQPPPHGAGGKRVLRPRXEQRSYAESPDIVLLPXAPPHRK 294
            PP++ E     TASG  + P Q P H         P   Q   A +  I   P  PP   
Sbjct: 928  PPKVGETYHPPTASGTRVPPVQQPSH----PNPYTPVAPQSPVAAASRISSSPNMPPSNP 983

Query: 295  PTIPTTPAPFTDXXXXXXXXXXXXITPSVSIPAPESPRDPRDDEQSEDDENEPPLAIPGH 474
             T     +   +            I P    PA      P    Q       P +++P  
Sbjct: 984  YTPIAVASSTVNPAHTYKPHGGSQIVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSP 1043

Query: 475  RELS 486
              LS
Sbjct: 1044 SALS 1047


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 388 PAPESPRDPRDDEQSEDDENEPPL 459
           P PE+  D  +DEQ+    +  PL
Sbjct: 50  PCPENVNDENEDEQNRSSRSSSPL 73


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 150 GKWFNNNPSAASTTWRRR 203
           GKW NN  SA S+ +R R
Sbjct: 353 GKWTNNGLSAVSSAYRTR 370


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 294 FPVRWSGWEQYNVGTLCIAA 235
           F   WS WE+YN G   + A
Sbjct: 886 FQSHWSDWEEYNGGLTKVQA 905


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 397 ESPRDPRDDEQSEDDENE 450
           E   D  DDE+ E+DE+E
Sbjct: 112 EEEEDEEDDEEDEEDEDE 129


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 250 SPDIVLLPXAPPHRKPTIPTTPA 318
           +P I  LP   P R+PT+  TP+
Sbjct: 423 APAIPKLPPKHPSRQPTVRATPS 445


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 271 PXAPPHRKPTIPTTPAPFTD 330
           P AP  ++PT PTT +  T+
Sbjct: 238 PTAPAEKEPTAPTTESKTTE 257


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 93  RRIVNVHFSIRIQRNTHNQ*YENNKY 16
           R + NV+FS+RI  N  N+   N KY
Sbjct: 28  RNVTNVYFSLRILLNRQNE-GNNCKY 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,629
Number of Sequences: 5004
Number of extensions: 38162
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)