Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J10
(516 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 25 0.35
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 25 0.35
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.3
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 22 4.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.7
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 5.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 10.0
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 10.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 10.0
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 25.4 bits (53), Expect = 0.35
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 106 VRSLPPELSELRALTASGLTITPAQPPPH 192
V S+PPE ALT+ L ++ QPPP+
Sbjct: 1110 VPSIPPEDVRCAALTSQSLQVS-WQPPPN 1137
Score = 21.0 bits (42), Expect = 7.5
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 175 AQPPPHGAGGKRVLRPRXEQRSYAESPDI 261
A PPP K V R +QR D+
Sbjct: 1752 ASPPPAATSMKSVSSRRRQQRKQQTPGDV 1780
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 25.4 bits (53), Expect = 0.35
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 106 VRSLPPELSELRALTASGLTITPAQPPPH 192
V S+PPE ALT+ L ++ QPPP+
Sbjct: 1106 VPSIPPEDVRCAALTSQSLQVS-WQPPPN 1133
Score = 21.0 bits (42), Expect = 7.5
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 175 AQPPPHGAGGKRVLRPRXEQRSYAESPDI 261
A PPP K V R +QR D+
Sbjct: 1748 ASPPPAATSMKSVSSRRRQQRKQQTPGDV 1776
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 4.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 78 VHFSIRIQRNTHNQ*YENNKYGNS 7
+H + + N +N Y NN Y N+
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNN 346
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 21.8 bits (44), Expect = 4.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 296 GFLCGGAXGSSTMSGL 249
G LCGG+ G++ ++ L
Sbjct: 301 GLLCGGSSGAALIAAL 316
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
V++ +A+ G+ LTL T S ++F + ETL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 247
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
V++ +A+ G+ LTL T S ++F + ETL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 247
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
V++ +A+ G+ LTL T S ++F + ETL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 247
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 170 VIVKPLAVNALNSLSSGGKDLTLRSTAESSTSIFQSAFKETL 45
V++ +A+ G+ LTL T S ++F + ETL
Sbjct: 274 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETL 315
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.4 bits (43), Expect = 5.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 116 KDLTLRSTAESSTSIFQSAFKETLTINNT 30
KD+ L ES+ S+ + LT NNT
Sbjct: 703 KDIILNVPKESTQSLTTTGNVSYLTTNNT 731
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 20.6 bits (41), Expect = 10.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 137 NSLSSGGKDLTLRSTAESSTSIFQS 63
+S ++GG+ L R +ESS S+ S
Sbjct: 417 SSSAAGGEGLADRRGSESSDSVLLS 441
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.6 bits (41), Expect = 10.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 367 ITPSVSIPAPESPRDPRDDEQSEDDENEPPLAI 465
+ PSV +PA + D + ++D P LA+
Sbjct: 1269 LAPSVRVPAKIASFDDKFTATYKEDVKLPCLAV 1301
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.6 bits (41), Expect = 10.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 283 PHRKPTIPTTPAP 321
PH P P TP P
Sbjct: 463 PHHHPHPPETPGP 475
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.316 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,726
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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