Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J06
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    31   0.23 
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    30   0.30 
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   0.91 
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    28   1.6  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.1  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   6.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   6.4  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   8.5  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G ++ L  GTYYL  IDD  RR+Y  K
Sbjct: 420 GSIERLRSGTYYLTGIDDMFRRSYSVK 446


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 536 PVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFXE---RGXPXKKWMDCVK 691
           P+T  L+S  LG +G  +++NE  + K  + + +E   +   R    K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 536 VPLSDFL*RIHSVFYPFSLLHTSIATFASLLHAIAFHPPLSLSNKHITTAI 384
           V +SD + RI+S F  FSL H  +   +S L    +   LS+++  I T++
Sbjct: 470 VAISDIVTRINSAFGDFSLDHLPVTILSSDLSYPQYLALLSVADAFIVTSL 520


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 9  RLDVLFPGTYYLVKIDDQRRRTYDRKH 89
          RLD L P TY +++ID +    + +KH
Sbjct: 14 RLDRLLPETYIVIRIDGKGFHKFTKKH 40


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -1

Query: 656 LFL*IFPHS*LTLS*QPHFHSVSSHVHTIPNVHSSASLSQVPLSDFL*RIHSVFYPFS 483
           LF  ++P   +TL   P      S + TI +V+S  ++        L R+H  FY  S
Sbjct: 84  LFYTLYPFQSITLPLMPFLEKTESSILTISHVYSPPTIITFDGFKRLLRMHVPFYTLS 141


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 484 RYSTHPSQHSHLCCMQSPFIRHFRCPT 404
           ++ T  S+H+++ C   P++  F C T
Sbjct: 12  QFLTWNSKHNYIVCCSGPYLLGFSCST 38


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 86  FPIISTPSLIIYFHKVI 36
           FPIISTPSL+I  + ++
Sbjct: 353 FPIISTPSLVISSNSIL 369


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 129 KTAYTKKFH*QVINVSYHKYA-FSDHLFSQGNMFLGTG 19
           +T  + + H ++  V   +Y+  SD  FS+GN+FL TG
Sbjct: 280 ETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTG 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,013
Number of Sequences: 5004
Number of extensions: 55888
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)