Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J06
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963...    33   0.18 
09_05_0013 + 20067115-20067183,20067585-20067691,20067905-200680...    32   0.55 
07_03_1340 + 25887135-25887372,25887676-25887798,25888388-258885...    30   2.2  
03_01_0128 + 995103-995174,996500-996606,996909-997041,997127-99...    28   6.7  
07_01_1085 + 9890369-9892114,9892213-9892731                           28   8.9  
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           28   8.9  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    28   8.9  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    28   8.9  

>08_02_1460 +
           27295201-27295269,27295968-27296074,27296252-27296384,
           27296621-27296714,27296828-27297030,27297167-27297240,
           27297331-27297406,27297530-27297585,27297939-27298026,
           27298115-27298255,27298338-27298487,27299015-27299221
          Length = 465

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 18  VLFPGTYYLVKIDDQRRRTYDRK 86
           +L PGT+YL K+D   RR YD+K
Sbjct: 427 LLPPGTFYLTKVDSMYRRFYDKK 449


>09_05_0013 +
           20067115-20067183,20067585-20067691,20067905-20068037,
           20068163-20068306,20068415-20068573,20068710-20068783,
           20068907-20068982,20069100-20069155,20069346-20069433,
           20069508-20069648,20069737-20069886,20070165-20070398
          Length = 476

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 18  VLFPGTYYLVKIDDQRRRTYDRK 86
           +L PGT+YL ++D   RR Y+RK
Sbjct: 429 LLPPGTFYLTRVDSMYRRFYERK 451


>07_03_1340 +
           25887135-25887372,25887676-25887798,25888388-25888527,
           25888680-25888817,25888898-25889119
          Length = 286

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 39  YLVKIDDQRRRTYDRKH 89
           Y + IDDQRR++YDR+H
Sbjct: 145 YELLIDDQRRKSYDREH 161


>03_01_0128 +
           995103-995174,996500-996606,996909-997041,997127-997270,
           997589-997747,997865-997938,998024-998099,998476-998531,
           998651-998738,998824-998964,999057-999206,999320-999476,
           1001183-1001773,1002673-1003532
          Length = 935

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 18  VLFPGTYYLVKIDDQRRRTY 77
           +L PGTYYL  +D   RR Y
Sbjct: 430 LLAPGTYYLTHVDSMYRRFY 449


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 570 PKRALLSFSVTGATFRLPLTYSFRILSI 487
           P  A+LSFSVT  TFRL  +  F++  +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282


>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 570 PKRALLSFSVTGATFRLPLTYSFRILSI 487
           P  A+LSFSVT  TFRL  +  F++  +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 541 HRCHFQTSSNVFIPYSIHS--RYSTHPSQHSHLCC 443
           H CH    S+   P ++HS   ++ H  +H H+ C
Sbjct: 849 HACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHC 883


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 604 IFIPSHHMSIPSQTCTPQLLCHRCHFQTSSNVFIPYSIHSRYSTHPSQHSHLCCM 440
           I++P  +  + S     + +  RC  + SS V  P S+ S+      +HS L CM
Sbjct: 182 IWVPPIYRRLLSVDKAERDMAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCM 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,400
Number of Sequences: 37544
Number of extensions: 313995
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)