Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J06
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X66435-1|CAA47061.1|  520|Homo sapiens Hydroxymethylglutaryl CoA...    40   0.009
L25798-1|AAA62411.1|  520|Homo sapiens 3-hydroxy-3-methylglutary...    40   0.009
BT007302-1|AAP35966.1|  520|Homo sapiens 3-hydroxy-3-methylgluta...    40   0.009
BC083514-1|AAH83514.1|  520|Homo sapiens 3-hydroxy-3-methylgluta...    40   0.009
BC000297-1|AAH00297.2|  555|Homo sapiens HMGCS1 protein protein.       40   0.009
AK095492-1|BAC04559.1|  509|Homo sapiens protein ( Homo sapiens ...    40   0.009
X83618-1|CAA58593.1|  508|Homo sapiens hydroxymethylglutaryl-CoA...    36   0.11 
U81859-1|AAB72036.1|  508|Homo sapiens 3-hydroxy-3-methylglutary...    36   0.11 
U12789-1|AAA92674.1|  363|Homo sapiens HMG CoA synthase protein.       36   0.11 
CR456850-1|CAG33131.1|  508|Homo sapiens HMGCS2 protein.               36   0.11 
BC044217-1|AAH44217.1|  508|Homo sapiens 3-hydroxy-3-methylgluta...    36   0.11 
AL589734-2|CAI22408.1|  508|Homo sapiens 3-hydroxy-3-methylgluta...    36   0.11 
AK128134-1|BAC87289.1|  377|Homo sapiens member 6 (SLC12A6).  pr...    33   1.1  
CR542109-1|CAG46906.1|  239|Homo sapiens NET-5 protein.                31   3.3  
BC071881-1|AAH71881.1|  239|Homo sapiens tetraspanin 9 protein.        31   3.3  
AK223179-1|BAD96899.1|  239|Homo sapiens tetraspan NET-5 variant...    31   3.3  
AF089749-1|AAC35859.1|  239|Homo sapiens tetraspan NET-5 protein.      31   3.3  

>X66435-1|CAA47061.1|  520|Homo sapiens Hydroxymethylglutaryl CoA
           Synthase protein.
          Length = 520

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G +D LF GT+YLV++D++ RRTY R+
Sbjct: 443 GSIDSLFEGTWYLVRVDEKHRRTYARR 469


>L25798-1|AAA62411.1|  520|Homo sapiens 3-hydroxy-3-methylglutaryl
           coenzyme A synthase protein.
          Length = 520

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G +D LF GT+YLV++D++ RRTY R+
Sbjct: 443 GSIDSLFEGTWYLVRVDEKHRRTYARR 469


>BT007302-1|AAP35966.1|  520|Homo sapiens
           3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
           (soluble) protein.
          Length = 520

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G +D LF GT+YLV++D++ RRTY R+
Sbjct: 443 GSIDSLFEGTWYLVRVDEKHRRTYARR 469


>BC083514-1|AAH83514.1|  520|Homo sapiens
           3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
           (soluble) protein.
          Length = 520

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G +D LF GT+YLV++D++ RRTY R+
Sbjct: 443 GSIDSLFEGTWYLVRVDEKHRRTYARR 469


>BC000297-1|AAH00297.2|  555|Homo sapiens HMGCS1 protein protein.
          Length = 555

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G +D LF GT+YLV++D++ RRTY R+
Sbjct: 478 GSIDSLFEGTWYLVRVDEKHRRTYARR 504


>AK095492-1|BAC04559.1|  509|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38173 fis, clone FCBBF1000053, highly similar to
           HYDROXYMETHYLGLUTARYL-COA SYNTHASE, CYTOPLASMIC (EC
           4.1.3.5). ).
          Length = 509

 Score = 39.9 bits (89), Expect = 0.009
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G +D LF GT+YLV++D++ RRTY R+
Sbjct: 432 GSIDSLFEGTWYLVRVDEKHRRTYARR 458


>X83618-1|CAA58593.1|  508|Homo sapiens hydroxymethylglutaryl-CoA
           synthase protein.
          Length = 508

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G  + LFPGT+YL ++D+Q RR Y R+
Sbjct: 480 GDTNSLFPGTWYLERVDEQHRRKYARR 506


>U81859-1|AAB72036.1|  508|Homo sapiens 3-hydroxy-3-methylglutaryl
           CoA synthase protein.
          Length = 508

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G  + LFPGT+YL ++D+Q RR Y R+
Sbjct: 480 GDTNSLFPGTWYLERVDEQHRRKYARR 506


>U12789-1|AAA92674.1|  363|Homo sapiens HMG CoA synthase protein.
          Length = 363

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G  + LFPGT+YL ++D+Q RR Y R+
Sbjct: 335 GDTNSLFPGTWYLERVDEQHRRKYARR 361


>CR456850-1|CAG33131.1|  508|Homo sapiens HMGCS2 protein.
          Length = 508

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G  + LFPGT+YL ++D+Q RR Y R+
Sbjct: 480 GDTNSLFPGTWYLERVDEQHRRKYARR 506


>BC044217-1|AAH44217.1|  508|Homo sapiens
           3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
           (mitochondrial) protein.
          Length = 508

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G  + LFPGT+YL ++D+Q RR Y R+
Sbjct: 480 GDTNSLFPGTWYLERVDEQHRRKYARR 506


>AL589734-2|CAI22408.1|  508|Homo sapiens
           3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
           (mitochondrial) protein.
          Length = 508

 Score = 36.3 bits (80), Expect = 0.11
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 6   GRLDVLFPGTYYLVKIDDQRRRTYDRK 86
           G  + LFPGT+YL ++D+Q RR Y R+
Sbjct: 480 GDTNSLFPGTWYLERVDEQHRRKYARR 506


>AK128134-1|BAC87289.1|  377|Homo sapiens member 6 (SLC12A6).
           protein.
          Length = 377

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -2

Query: 592 SHHMSIPSQTCTPQLLCHRCHFQTSSNV--FIPYSIHSRYSTHPSQHSHLCCMQ-SPFIR 422
           S + +  + TC+      + H +  S+     P++IHSR  THP  H+H+C    SP   
Sbjct: 296 SRYSAPHAHTCSHTSHITQLHTRPCSHTCAHTPHTIHSR--THPLTHAHVCSHTCSPI-- 351

Query: 421 HFRCPTSTSQQQSKIKVLIN 362
           H    + TS Q S   +L N
Sbjct: 352 HTHTSSHTSHQVSHTLMLTN 371


>CR542109-1|CAG46906.1|  239|Homo sapiens NET-5 protein.
          Length = 239

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 161 IKKNKCLVFVQSLCLLSISVNYLLVFVTHFVFLSQINK 274
           IK+NKCL+    + LL I +  L++ +  FV++ ++N+
Sbjct: 76  IKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNE 113


>BC071881-1|AAH71881.1|  239|Homo sapiens tetraspanin 9 protein.
          Length = 239

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 161 IKKNKCLVFVQSLCLLSISVNYLLVFVTHFVFLSQINK 274
           IK+NKCL+    + LL I +  L++ +  FV++ ++N+
Sbjct: 76  IKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNE 113


>AK223179-1|BAD96899.1|  239|Homo sapiens tetraspan NET-5 variant
           protein.
          Length = 239

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 161 IKKNKCLVFVQSLCLLSISVNYLLVFVTHFVFLSQINK 274
           IK+NKCL+    + LL I +  L++ +  FV++ ++N+
Sbjct: 76  IKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNE 113


>AF089749-1|AAC35859.1|  239|Homo sapiens tetraspan NET-5 protein.
          Length = 239

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 161 IKKNKCLVFVQSLCLLSISVNYLLVFVTHFVFLSQINK 274
           IK+NKCL+    + LL I +  L++ +  FV++ ++N+
Sbjct: 76  IKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNE 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,461,919
Number of Sequences: 237096
Number of extensions: 1896467
Number of successful extensions: 7380
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7379
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)