Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_J06
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    35   0.052
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    33   0.21 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    33   0.21 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    33   0.21 
AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
 Frame = +2

Query: 407 WT-TKVADER-RL-HAAEMRMLRWMCGVTRMDR-IRNEYVRGSLKVAPVTEKLRSARLGW 574
           WT TK   ER R+ HAA  R L  +    + +R I  E VR   K+      ++  +LGW
Sbjct: 66  WTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGW 125

Query: 575 YGHVMRRNENEVVKRVLTMNVERFXER--GXPXKKWMDCVKDDMGRR 709
            GHV RR +      ++     R  +R  G P  +W D ++ ++  R
Sbjct: 126 AGHVARRTDGRWT-TLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTR 171


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = +2

Query: 407  WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPVTEKLRSARLGW 574
            WT   A   R+      + R + G+T    R   +  E +R    V      ++  +LGW
Sbjct: 755  WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 814

Query: 575  YGHVMRRNENEVVKRVLTMNVERFXER-GXPXKKWMDCVKDDMGRR 709
             GHV RR +      +       +    G P  +W D ++ ++  R
Sbjct: 815  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTR 860


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = +2

Query: 407  WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPVTEKLRSARLGW 574
            WT   A   R+      + R + G+T    R   +  E +R    V      ++  +LGW
Sbjct: 930  WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 989

Query: 575  YGHVMRRNENEVVKRVLTMNVERFXER-GXPXKKWMDCVKDDMGRR 709
             GHV RR +      +       +    G P  +W D ++ ++  R
Sbjct: 990  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTR 1035


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = +2

Query: 407 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRNEYVRGSLKVAPVTEKLRSARLGW 574
           WT   A   R+      + R + G+T    R   +  E +R    V      ++  +LGW
Sbjct: 669 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 728

Query: 575 YGHVMRRNENEVVKRVLTMNVERFXER-GXPXKKWMDCVKDDMGRR 709
            GHV RR +      +       +    G P  +W D ++ ++  R
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTR 774


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
 Frame = +2

Query: 407 WTTKVADERRLHAAEMRMLRWMCGVTRMDRIRNEYVRGSL-KVAPVTEKL---RSARLGW 574
           WT   A   R+      + R + G+T   +   +  R  + K++ V + L   +  +LGW
Sbjct: 281 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGW 340

Query: 575 YGHVMRRNENEVVKRVLTMNVERFXER-GXPXKKWMDCVKDDMGRR 709
            GHV RR +      +       +    G P  +W D ++ ++  R
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTR 386


>AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical
           protein D1079.1 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 CLVFVQSLCLLSISVNYLLVFVTHFVFLSQI 268
           C +++    LLSISV Y + F+ +FV  S +
Sbjct: 47  CALYIHCFGLLSISVEYKIAFLYNFVMDSNV 77


>Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical
           protein F58G1.6 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -1

Query: 590 SSHVHTIPNVHSSASLSQVPLSDFL*RIHSVFYPFSLLHTSIATFASLLHAIAFHPP 420
           S+  + +P    S ++   P S F  +   VF P  +L T    FA   H    H P
Sbjct: 337 STTYYCVPPSEMSFTVDPPPYSTFGAKTDPVFIPIHMLKTPYRPFAPAYHMFRNHGP 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,199
Number of Sequences: 27780
Number of extensions: 314189
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)