Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J05
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 186 1e-47
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 186 1e-47
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 169 1e-42
01_06_0579 + 30379243-30379617 29 2.3
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 3.1
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 4.1
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 5.4
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 5.4
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 7.1
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 9.4
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 186 bits (454), Expect = 1e-47
Identities = 93/146 (63%), Positives = 113/146 (77%), Gaps = 2/146 (1%)
Frame = +2
Query: 152 RTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPK 331
RT + FN ++L+RLFMS+ NRPP+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPK
Sbjct: 39 RTKSNFNAVILKRLFMSKTNRPPLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPK 97
Query: 332 MTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPG 511
M V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAVRHFG APG
Sbjct: 98 MKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPG 157
Query: 512 APRSHTKPYVRTKGH--EKARPSRRA 583
P SHTKPYVR+KG EKAR R +
Sbjct: 158 VPHSHTKPYVRSKGRKFEKARGRRNS 183
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 186 bits (453), Expect = 1e-47
Identities = 94/152 (61%), Positives = 116/152 (76%), Gaps = 8/152 (5%)
Frame = +2
Query: 152 RTNAKFNQIVLRRLFMSRINRPPISVSRLARHM--KKPTREGL----IAVVVGTVTNDVR 313
RT + FN ++L+RLFMS+ NRPP+S+ RL R M K P R + IAV+VGTVT+D R
Sbjct: 39 RTKSHFNAVILKRLFMSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKR 98
Query: 314 LYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRH 493
+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+H
Sbjct: 99 IYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH 158
Query: 494 FGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 583
FGPAPG P S+TKPYVR+KG EKAR R +
Sbjct: 159 FGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 190
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 169 bits (412), Expect = 1e-42
Identities = 92/163 (56%), Positives = 114/163 (69%), Gaps = 19/163 (11%)
Frame = +2
Query: 152 RTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPK 331
RT + FN ++LRRLFMS+ NRPP+S+ RL R M+ +E IAV+VGTVT+D R+Y++P
Sbjct: 39 RTKSPFNAVILRRLFMSKTNRPPLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPA 96
Query: 332 MTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT-----------------VLVQ 460
M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T VL++
Sbjct: 97 MKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLR 156
Query: 461 GQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPSRRA 583
G +NAREAV+HFGPAPG P S+TKPYVR+KG EKAR R +
Sbjct: 157 GPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 199
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -3
Query: 320 CTVSRHL*LSPLPRQSNPHELASS 249
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 291 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 187
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>09_06_0121 +
20975132-20975755,20976834-20976977,20977333-20977457,
20978090-20978194,20978755-20978989
Length = 410
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 158 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 334
N K N VL L +S+ + P ++V L H + P +V+GT T+D + +
Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79
Query: 335 TVAALHVTEKARARILAAGGEI 400
AAL + + A AAGG +
Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 388 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 290
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 559 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 380
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 379 NACTSFFG-NMKSSHRHLRY 323
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 402 LLLISWLFVLRLARRQYWYKVSEML 476
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 284 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 424
++G++ DV I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,702
Number of Sequences: 37544
Number of extensions: 384932
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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