Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J04
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 75 6e-14
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386... 74 1e-13
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 69 3e-12
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 68 5e-12
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 63 2e-10
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 59 3e-09
08_02_0090 - 12249919-12250158,12250826-12250927,12251046-122511... 29 2.3
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311... 29 2.3
02_02_0675 + 12845980-12846111,12846211-12846363,12846954-128471... 29 4.0
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 4.0
07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400... 28 7.0
11_06_0707 + 26467214-26470309 27 9.2
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198... 27 9.2
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 74.5 bits (175), Expect = 6e-14
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +3
Query: 252 IAAKLAFLPPEP-TYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIA 428
+AA+ AF PP P +Y P + S + + +E T RG ++
Sbjct: 8 VAARFAFFPPAPPSYGVEPPPSPSPAAAAEDGAVVELSGVPRRAGVEARRLPTGRGTEVV 67
Query: 429 CLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSXK 608
++VR P AR T+L+SHGNA DLGQM ++ L + +N N+ KPS +
Sbjct: 68 AMYVR-QPGARLTLLYSHGNAADLGQMYELFVELSSHLNVNLMGYDYSGYGQSSGKPSEQ 126
Query: 609 NLYADI 626
N Y+DI
Sbjct: 127 NTYSDI 132
>12_01_1059 -
10934937-10935446,10938224-10938271,10938383-10938619,
10938711-10938747,10941018-10941286
Length = 366
Score = 73.7 bits (173), Expect = 1e-13
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 264 LAFLPPEP-TYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFV 440
+AF PP P +YA D ++T + +EN+E RT RGN +A ++V
Sbjct: 1 MAFFPPTPPSYALVDDPAAGVTTMT---------GQPHRENVEVLRLRTRRGNTVAAVYV 51
Query: 441 RCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSXKNLYA 620
R P+A T+L+SHGNA DLG + +L L + N+ KPS N YA
Sbjct: 52 R-HPDAATTLLYSHGNAADLGHLYQLFLHLSFNLRVNVLGYDYSGYGQSSGKPSEHNTYA 110
Query: 621 DI 626
DI
Sbjct: 111 DI 112
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 68.9 bits (161), Expect = 3e-12
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +3
Query: 252 IAAKLAFLPPEP-TYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIA 428
+AA+ AF PPEP TYA DE + + ++ T +G+K+
Sbjct: 10 LAARFAFFPPEPATYAVRKDEACGGGGRLVASGVPRDAA------VDVLLVDTRKGSKVV 63
Query: 429 CLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSXK 608
++R +P AR T+L+SHGNA DLGQ+ ++ L + N+ KPS +
Sbjct: 64 AFYLR-NPAARLTVLYSHGNAADLGQLYDLFVQLKVNLKVNLMGYDYSGYGASTGKPSEE 122
Query: 609 NLYADI 626
N YADI
Sbjct: 123 NTYADI 128
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 68.1 bits (159), Expect = 5e-12
Identities = 44/126 (34%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +3
Query: 252 IAAKLAFLPPEP-TYAFTPDETGSKFSLTLTERAEWQYSEREKENIEGFYSRTTRGNKIA 428
+AA+LAF PPEP TY +E G + +E T G ++
Sbjct: 8 VAARLAFFPPEPPTYELVAEEGGGGGGVVRMTGVS------ADAGVEVHALPTKGGTRVV 61
Query: 429 CLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXXXXXXXXXXXXKPSXK 608
F R P+AR T+L+SHGNA DLGQM +L L + NI KPS
Sbjct: 62 AAFWR-HPSARLTLLYSHGNAADLGQMLGLFLELRAHLRVNIMSYDYSGYGASTGKPSEY 120
Query: 609 NLYADI 626
N Y DI
Sbjct: 121 NTYCDI 126
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 62.9 bits (146), Expect = 2e-10
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Frame = +3
Query: 252 IAAKLAFLPPEP-TYAFTPDETGSKFSLTLTERAEWQYSERE---------------KEN 383
IAA+ AF PP P +Y D + ++ R + R+ ++
Sbjct: 8 IAARFAFFPPTPPSYTVVADAATGRLAIPEISRPPARRRRRDGGGDASASGAAPAEDEDG 67
Query: 384 IEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIFXX 563
E RT RGN+I + VR A T+L+SHGNA DLGQM ++ L R+ N+F
Sbjct: 68 TEVVRLRTRRGNEIVGVHVR-HERASATLLYSHGNAADLGQMYGLFVELSRRLRINLFGY 126
Query: 564 XXXXXXXXXXKPSXKNLYADI 626
KP+ N YADI
Sbjct: 127 DYSGYGRSTGKPTECNTYADI 147
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 381 NIEGFYSRTTRGNKIACLFVRCSPNARFTILFSHGNAVDLGQMSSFYLGLGTRINCNIF- 557
N+E RT RG ++ ++VR AR T+L+SHGNA DLGQM ++ L +N N+
Sbjct: 60 NVEARRLRTKRGTEVVAMYVR-QAGARLTLLYSHGNAADLGQMFELFVELSAHLNVNLMG 118
Query: 558 -----XXXXXXXXXXXXKPSXKNLYADI 626
KPS N YADI
Sbjct: 119 IRIRRLYDYSGYGQSSGKPSEHNTYADI 146
>08_02_0090 -
12249919-12250158,12250826-12250927,12251046-12251135,
12251227-12251421
Length = 208
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 382 FSFSRSEYCHSARSVSVKENFDPVSSGVNAYVGSGGRNANLAAIFPGHGGQQNRQQSS 209
F R E C S ++ + N +N + NLAA+FP H +Q ++
Sbjct: 41 FKHQRQEDCQSIQNALSEFNNQTKEYMINGSASTPPPQINLAALFPSHSSPTTQQNTT 98
>03_02_0895 +
12230683-12230844,12230937-12230991,12231106-12231169,
12231292-12231334,12231509-12231607,12231710-12231778,
12231912-12232245,12232317-12232471,12232592-12233287
Length = 558
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = -2
Query: 421 LLPLVVLE*KPSMFSFSRSEYCHSARSVSVKENFDPVSSGVNAYVGSGGRNANLAAIFPG 242
+L L+VL +P+ +R H + S K+ D + A GG A + A PG
Sbjct: 439 VLKLLVLIGRPAFMERARRVLGHERQESSSKQGHDQKPAVTRAGDDDGGAKAGVTAAKPG 498
Query: 241 HGGQQNRQQSSLKLNPF 191
+ ++++ PF
Sbjct: 499 KKKGSASKPAAVEFGPF 515
>02_02_0675 +
12845980-12846111,12846211-12846363,12846954-12847100,
12847372-12847656
Length = 238
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 306 DETGSKFSLTLTERAEWQYSEREKENIEGFY 398
DET SK + + R ++Q SE +E+++G Y
Sbjct: 85 DETVSKLTKAIKWRQDFQVSELSEESVKGLY 115
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 164 CSQTIPKQNERIKFQRTLLPVLLSAMPRKN 253
C++T PK N K +R LLP+ +S + R N
Sbjct: 596 CNETTPKSNRAKKKKRMLLPLGVSNINRPN 625
>07_01_0542 +
4002542-4003119,4004347-4004404,4004518-4004835,
4005201-4005446,4005550-4005648,4005912-4006097,
4006204-4006401,4006521-4006596,4006721-4007637
Length = 891
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 3 LWQRLCRRHNVLLKVMAD 56
LW+ LCRRH +++++ D
Sbjct: 594 LWEALCRRHQTVVQLLVD 611
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 327 SLTLTERAEWQYSEREKENIEGFYSRTTRGNKIACLFV 440
+L TE+ + YSE NIE + + T + + LFV
Sbjct: 727 NLDCTEQTDEAYSEENARNIEKIFEKLTPPHNLEDLFV 764
>05_05_0236 -
23517512-23517682,23519436-23519516,23519685-23519891,
23519987-23520164,23520250-23520284,23520725-23520826,
23520908-23520964,23521236-23521325
Length = 306
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 382 FSFSRSEYCHSAR---SVSVKENFDPVSSGVNAYVGSGGRNANLAAIFPGHGGQQNRQQS 212
F +E S+R SVS KENFD ++S + GS R+ + G +QQ
Sbjct: 61 FEVGATEVRRSSRARNSVSYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQR 120
Query: 211 SLK 203
+ K
Sbjct: 121 AFK 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,731
Number of Sequences: 37544
Number of extensions: 276809
Number of successful extensions: 713
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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