Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_J01
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 66 4e-14
07_03_0571 - 19602755-19603831 62 4e-10
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 32 0.63
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529... 31 1.5
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 30 1.9
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 30 2.6
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 29 3.4
12_02_1080 - 25911521-25911922 29 4.5
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 29 4.5
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 4.5
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 7.8
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 65.7 bits (153), Expect(2) = 4e-14
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +3
Query: 171 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 350
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 351 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 521
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 522 HIISVANEIGRLP 560
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
Score = 30.3 bits (65), Expect(2) = 4e-14
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Frame = +3
Query: 555 LPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAY 734
L F D + + E+ + ++++NKF SV+S+ + + + + +E S+
Sbjct: 218 LQQKFTDVIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKV 277
Query: 735 DSLD----------SDVLQSYTEF 776
LD S++LQ+ TEF
Sbjct: 278 GDLDSYEIEGGETKSEILQNLTEF 301
>07_03_0571 - 19602755-19603831
Length = 358
Score = 62.5 bits (145), Expect = 4e-10
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Frame = +3
Query: 165 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 341
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 342 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 485
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 486 KSRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFK 653
K R + I E+ + PT D+ + + + K+ +Y+KF
Sbjct: 157 KGNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212
Query: 654 SVV---SYAQSDLPLYTKKSI 707
S+V Q+ LP+ K I
Sbjct: 213 SLVRSDPIIQTLLPMSPKGEI 233
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 568 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCP 687
SW++ W +P S Q S+ P+ S I ++ LW R PS P
Sbjct: 306 SWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNP 343
>07_03_1525 +
27448257-27448582,27450741-27450973,27451280-27452919,
27453129-27453575
Length = 881
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 749 AVQRVVCRQLAGALNRLLSVEGQVGLGVRY 660
A Q+V+ + AL RL S+EG++G+ +RY
Sbjct: 552 AQQKVLIKLSLQALQRLTSIEGEIGMTLRY 581
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = -3
Query: 557 ETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVR 378
E + SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 377 GHSNKQLLGVIFGRCNLSP 321
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 749 AVQRVVCRQLAGALNRLLSVEGQVGLGVRY 660
A Q+V+ + L RL S+EG++G+ +RY
Sbjct: 255 AQQKVLLKSSLKVLQRLTSIEGEIGITLRY 284
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 568 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTCPST-LRSLLRAP 717
+W W PF T + S+S R+P+P+ P+T R LLR P
Sbjct: 41 AWKTKPWASPFFGFSTPSPSPAHHLFSASSPRRSPAPSAPTTPARRLLRLP 91
>12_02_1080 - 25911521-25911922
Length = 133
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 135 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTSRRKNVAGRQ 19
P P P P S P + YGC++ RR+ + G +
Sbjct: 33 PVPYCPLPSPSLSTPLHARSYGCVATAREERRRRLDGEE 71
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -3
Query: 473 DHLDVLSTRFAETVADHF---------RYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 333
D+L ++S A V D F ++ SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 332 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 222
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 448 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 323
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1
Query: 643 TSSSLWYRTPSPTCPSTLRSLLRAPAS 723
+SSSL RTPSPT P L LLR P+S
Sbjct: 13 SSSSLSPRTPSPTHP--LPHLLRLPSS 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,431,337
Number of Sequences: 37544
Number of extensions: 602414
Number of successful extensions: 1715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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