Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I22
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    32   0.074
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    27   2.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.9  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.4  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    25   8.5  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   8.5  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = +2

Query: 488 VEELTILSQNLHSXXXXXXXXXXXXKDENATLKEKVNYLEKERAKYLN------LGMSSN 649
           VEELT+ +   HS            K E   LKEK+  +E ER + ++      L     
Sbjct: 246 VEELTVQASQKHSHIAEMESSLQTSKQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQ 305

Query: 650 DLSFNXTSLSISNDISNEVNE 712
            ++ N T +S S ++ N   E
Sbjct: 306 TVNENITRISTSIELKNTALE 326


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 HLKQKDLIKYKKEQYVRVKKAMDTIKRLGK 292
           H KQK   +YKK ++   KKA   IK+L K
Sbjct: 54  HKKQKIFERYKKVRFFERKKAERRIKQLEK 83


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 581 LKEKVNYLEKERAKYLNLGMSSNDLSF----NXTSLSISNDISNEVNERPLI 724
           L+ +V YLE    K  N  +SSN  SF           +N++ N   ER +I
Sbjct: 77  LESRVRYLETLLKKNTNFDLSSNSPSFLFFLREQKFQATNELENMSPERKVI 128


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 270 SMAFLT-LTYCSFLYFIKSFC 211
           S+AF+  L YCSF +FI   C
Sbjct: 432 SLAFIVCLKYCSFYFFIGPIC 452


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 629 NLGMSSNDLSFNXTSLSISNDISNEVNERPLIXKPFE 739
           NL     D   + TS  + ND   EV  R +   PFE
Sbjct: 52  NLVSRYRDRKLSRTSTLVGNDTLIEVGSRSIARSPFE 88


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 566 DENATLKEKVNYLEKERAKYLNLGMSSN 649
           D+N +L+++V YLE E  K +    S N
Sbjct: 106 DDNVSLEKRVEYLETENTKLVKTLNSLN 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,859
Number of Sequences: 5004
Number of extensions: 29121
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)