Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I21
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         27   0.20 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    27   0.20 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    27   0.20 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 17  AVNYVTTLGLIKTLKISNKNCNSCS-TLVYNRGNFHKSILAYRV*HNCLENYYSAASD 187
           AVN  T  G + +L + + +CN+ S T+VY      + ++ Y   HN  ++++   S+
Sbjct: 175 AVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEGLIVY---HNSDDSFHRLTSN 229


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 17  AVNYVTTLGLIKTLKISNKNCNSCS-TLVYNRGNFHKSILAYRV*HNCLENYYSAASD 187
           AVN  T  G + +L + + +CN+ S T+VY      + ++ Y   HN  ++++   S+
Sbjct: 175 AVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEGLIVY---HNSDDSFHRLTSN 229


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 17  AVNYVTTLGLIKTLKISNKNCNSCS-TLVYNRGNFHKSILAYRV*HNCLENYYSAASD 187
           AVN  T  G + +L + + +CN+ S T+VY      + ++ Y   HN  ++++   S+
Sbjct: 175 AVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEGLIVY---HNSDDSFHRLTSN 229


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 464 APRDKQSKRSFSRGSVACVIARALFCI 384
           A +D++ +  F    VA V  RAL C+
Sbjct: 409 AEQDRRERMEFDWKQVALVSDRALLCV 435


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 202 CFLLCHC 222
           CF LCHC
Sbjct: 743 CFALCHC 749


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 578  IKVKPKNSSVNSTQTIVAQSVLMNSLLKSVLLCRN 682
            +KV+ +  S  S Q    Q+++ N   KS+L   N
Sbjct: 970  VKVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTAN 1004


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 598 LFSQFDTDNSGSISLDEF-LIKIRPPMSESRRNIVXQAFKKLDKT-GDGAITIDDIKGVY 771
           +FS +D +N+G++  +E         + E  R          D T GDG + +++    +
Sbjct: 241 MFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAF 300

Query: 772 S 774
           S
Sbjct: 301 S 301



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 297 FSFYFWRILVVEAS 256
           FSF+ W ILV E S
Sbjct: 507 FSFHQWGILVYEPS 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,255
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)