Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I18
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   4.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   4.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   5.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   7.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 133 HSPSSELYARLPTREIKKESTKGRIIEPQE 222
           H PSSE+Y+      +  E     +  P+E
Sbjct: 277 HQPSSEVYSMFDKLLLMSEGRTAFLGSPEE 306


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 133 HSPSSELYARLPTREIKKESTKGRIIEPQE 222
           H PSSE+Y+      +  E     +  P+E
Sbjct: 277 HQPSSEVYSMFDKLLLMSEGRTAFLGSPEE 306


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 61  PYPQKVVYSLALPLSLLKSMGDDSHSPSS-ELYARLPTREIKKESTKGRII 210
           PYPQ  + S    LSL ++    +H  +     A  P REI        I+
Sbjct: 37  PYPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSSPIL 87


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 191 PQRGGSLNLRKNLMDINKLK 250
           P RG  L+  +N + ++K+K
Sbjct: 216 PHRGLLLDTARNFLTVSKIK 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,222
Number of Sequences: 336
Number of extensions: 1390
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)