Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I18
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    24   7.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   7.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   7.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   10.0 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   10.0 

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 112 KSMGDDSHSPSSELYARLPTREIKKESTKGRIIEPQEE 225
           +S   +S+  SSE   + P RE+  + T  RIIE +EE
Sbjct: 41  ESEDKESNLTSSENIGKNPERELNSDGT-DRIIEEEEE 77


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 94   LPLSLLKSMGDDSHSPSSELYARLPTREIKKESTKGRIIEPQEEFNGYK*VEINYYL 264
            LP S LK + ++  S +S+L  RLP ++     TK   I       G   VE+ YYL
Sbjct: 903  LPESSLKIL-ENIFSIASDLLLRLPLKDQCDFVTKQLAIALAPSMFGSNAVELVYYL 958


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 157 HTAHLMGSDYRRPWTSAMTEVEPS 86
           HTA   G  Y +PW  A   VEPS
Sbjct: 71  HTAPSTGKTYLQPWNDA---VEPS 91


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 94  LPLSLLKSMGDD 129
           LP+SLL+S+GDD
Sbjct: 751 LPISLLRSIGDD 762


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 94  LPLSLLKSMGDD 129
           LP+SLL+S+GDD
Sbjct: 751 LPISLLRSIGDD 762


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 79   VYSLALPLSLLKSMGDDSHSPSSELYARLPTREIKKE 189
            ++SL    S ++S G    S S  ++ARL   E+K+E
Sbjct: 4720 LFSLDTVYSSVRSRGLTVQSVSFAVFARLLANEVKQE 4756


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 209 LNLRKNLMDINKL 247
           LNLRK LMDI++L
Sbjct: 65  LNLRKRLMDISEL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,028
Number of Sequences: 5004
Number of extensions: 22573
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)