Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I18
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    28   2.4  
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968...    27   5.5  
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133...    27   7.2  
02_02_0653 - 12655787-12656311                                         26   9.5  

>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 54  LMSISPKGSLQLGSTSVIAE 113
           ++ + P+G LQLGSTSVI E
Sbjct: 125 IIPVLPRGVLQLGSTSVILE 144


>03_06_0741 +
           35893538-35895600,35896274-35896474,35896701-35896814,
           35897570-35897649,35897772-35897896,35898008-35898079
          Length = 884

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 109 LKSMGDDSHSPSSELYARLPTREIKKESTKGRIIEPQEE 225
           L S  + S S S   + R P R I++ + +GRI+  +EE
Sbjct: 685 LLSCPNHSSSSSEGFFFRNPNRSIEQGTGQGRIVAGEEE 723


>11_06_0653 +
           25911162-25911272,25911648-25911694,25912877-25913355,
           25914089-25914249,25914324-25914519,25914745-25914807,
           25914898-25915047,25915148-25915494
          Length = 517

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 121 GDDSHSPSSELYARLPTREIKKESTKGRIIEPQE 222
           G  S  PSS L   LP++   ++ST  + + P+E
Sbjct: 320 GSCSEQPSSMLRRNLPSKSKLQQSTSNQSVTPRE 353


>02_02_0653 - 12655787-12656311
          Length = 174

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 142 MGSDYRRPWTSAMTEVE---PSCRLPFGDMDISPVIKLFK*LAEADHRP 5
           M S   +PW S   + +   P C LP+  M  +    LF  ++E  HRP
Sbjct: 1   MFSGVCKPWRSIAQQQQQQHPPCNLPWLLMPSTAATSLFCVVSEDTHRP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,491
Number of Sequences: 37544
Number of extensions: 144199
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)