Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I18
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.14 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   5.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.9  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    20   9.1  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 202 APLWTLFLFLL*ADEHTAHLMGSDYRRPWTSAMTEVEPSCRLPF 71
           A + T+FL+L     ++A L G D +R   + +  +  SC + F
Sbjct: 213 AMIGTIFLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVIAF 256


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 153 VCSSAYKRNKKRV 191
           VC   Y RNKK+V
Sbjct: 72  VCRLGYLRNKKKV 84


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 153 VCSSAYKRNKKRV 191
           VC   Y RNKK+V
Sbjct: 72  VCRLGYLRNKKKV 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 160 RLPTREIKKESTKGRIIEP 216
           RLP RE++  +T   ++ P
Sbjct: 388 RLPCREVEAAATARNVVAP 406


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 246 NLFISIKFFLRFNDPPLCGLFFYFSCRQTS 157
           +L I +K FL    PP   L  YF+   T+
Sbjct: 813 SLRILLKRFLDITTPPTPNLLRYFASIATN 842


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 148 HLMGSDYRRPW 116
           HL G  + RPW
Sbjct: 46  HLCGKAFSRPW 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,347
Number of Sequences: 438
Number of extensions: 1430
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)