Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I15
         (346 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   0.88 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   0.88 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    20   8.2  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 67  IPVCICSXEMSSFKGYSIFTDIGCISY 147
           IP  +C  + SS K Y+IF   GC  +
Sbjct: 36  IPCKVCG-DFSSGKHYNIFACDGCAGF 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 67  IPVCICSXEMSSFKGYSIFTDIGCISY 147
           IP  +C  + SS K Y+IF   GC  +
Sbjct: 36  IPCKVCG-DFSSGKHYNIFACDGCAGF 61


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 19  LNLMGCSLAYLILMYYIPVCICS 87
           L L  C L  ++  YY+ + +C+
Sbjct: 273 LILFSCLLHLVVTPYYLLIEVCN 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,134
Number of Sequences: 336
Number of extensions: 883
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)