Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I15
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    25   4.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   7.6  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.6  

>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 13  ITLNLMGCSLAYLILMYY 66
           I  NL+GCSLA L+ + Y
Sbjct: 100 IVANLLGCSLALLLNILY 117


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 273 CKSHFSFYYTFISARLYTSGRLIILLMTF*NQSSKNLTFSLLITYTS 133
           CKS+ S Y   +  RLY     +++ ++  N    N  +S L+ Y+S
Sbjct: 82  CKSNCSPYPILLFTRLYMCLISLLIDLSIWNIVPLNARWSALLLYSS 128


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 273 CKSHFSFYYTFISARLYTSGRL 208
           C+  FS++  F S R +TSG L
Sbjct: 19  CERRFSYFDMFRSKRKFTSGIL 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,974
Number of Sequences: 5004
Number of extensions: 15645
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)