Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I15
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0243 + 1872229-1872446,1872745-1872842,1872991-1873073,187...    29   0.98 
06_01_0429 - 3056302-3056570,3056681-3056951,3057055-3057206,305...    26   9.1  

>11_01_0243 +
           1872229-1872446,1872745-1872842,1872991-1873073,
           1873163-1873289,1873623-1873686,1873802-1873899,
           1873981-1874065,1874179-1874302,1874608-1874709,
           1874821-1874934,1875325-1875389,1875891-1875972,
           1876069-1876152
          Length = 447

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 37  SLAYLILMYYIPVCICSXEMSSFKGYSIFTDIGCISYK 150
           S+  L+   ++PVC  S   SSF+G+ +F ++   S+K
Sbjct: 331 SMRQLLYRKFLPVCFRST--SSFQGFKLFPELTAYSFK 366


>06_01_0429 -
           3056302-3056570,3056681-3056951,3057055-3057206,
           3057419-3057631,3057791-3057959
          Length = 357

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 3   LRTDYLKSNGMFSGVSHLDVLHSSLY 80
           LRT  L SNG    +   DVLH++LY
Sbjct: 116 LRTKVLTSNGNNDQLPAPDVLHNALY 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,756,013
Number of Sequences: 37544
Number of extensions: 76127
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)