Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I15
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF106582-3|AAC78214.1|  222|Caenorhabditis elegans Hypothetical ...    27   3.6  

>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical
           protein T08G11.1b protein.
          Length = 3185

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 114 IPFERRHFXTTDTNW-NVIHQDEIR 43
           I  E+ +F TTD NW   IH+D ++
Sbjct: 174 ITLEKLNFKTTDENWRETIHKDVVK 198


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical
           protein T08G11.1a protein.
          Length = 3212

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 114 IPFERRHFXTTDTNW-NVIHQDEIR 43
           I  E+ +F TTD NW   IH+D ++
Sbjct: 174 ITLEKLNFKTTDENWRETIHKDVVK 198


>AF106582-3|AAC78214.1|  222|Caenorhabditis elegans Hypothetical
           protein W05F2.3 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 25  LMGCSLAYLILMYYIPVCICSXEMSSFKGYSIFTDIGC 138
           L+G   A ++L+ Y  +C C    S     + F + GC
Sbjct: 157 LLGAMSAIVVLIAYTVICKCCRRRSRLNHLAAFVNDGC 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,533,515
Number of Sequences: 27780
Number of extensions: 82973
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)