Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I12
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...   155   1e-38
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    28   1.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   3.4  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   4.5  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   7.9  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.9  

>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score =  155 bits (375), Expect = 1e-38
 Identities = 83/192 (43%), Positives = 114/192 (59%)
 Frame = +1

Query: 238 IVEKVPYTEIDWKAYMQECEGFLNGTTLDYSKLRGDTGPLVYPAGFVYIYSFLYLITNQG 417
           I+ KVPYTEIDW AYM++   FL G   DY  L G TGPLVYP G V++Y+ LY +T+ G
Sbjct: 41  IISKVPYTEIDWIAYMEQVNSFLLGER-DYKSLVGCTGPLVYPGGHVFLYTLLYYLTDGG 99

Query: 418 ENIKLAQYIFIGIYLLQLTLVFRIYLKAKKVPPYVLILVILTSYRIHSIYVLRLFNDPIA 597
            NI  AQYIF  +Y +   +V  ++ K  + P Y+ +L+IL S R+HSI++LRLFND   
Sbjct: 100 TNIVRAQYIFAFVYWITTAIVGYLF-KIVRAPFYIYVLLIL-SKRLHSIFILRLFNDGFN 157

Query: 598 VLLLYVSLNFFLESKWFLGSLFYSLGVSVKMNILLYAPAXXXXXXVNLGLKLTLVQLLIC 777
            L   + +    + KW   S+  S+  SVKM+ LLY PA        LG K T + + + 
Sbjct: 158 SLFSSLFILSSCKKKWVRASILLSVACSVKMSSLLYVPAYLVLLLQILGPKKTWMHIFVI 217

Query: 778 GSVQVXLGLPFL 813
             VQ+   +PFL
Sbjct: 218 IIVQILFSIPFL 229


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
 Frame = +1

Query: 325 YSKLRGDTGPLV-YPAGFVYIYSFLYLITNQGENIKLAQYIFIGIYLLQ-LTLVFRIY-- 492
           + K+RG     V +P G  YI   LY + N+  N     +  + ++L Q L   F +   
Sbjct: 94  FCKIRGYKAVRVLFPVGVQYIKE-LYTLLNESSNNTWHFHYIVLLWLSQALNTPFPLNSL 152

Query: 493 ---LKAKKVPPYVLILVILTSYRIH---SIYVL-RLFNDPIAVLLLYVSLNFFLESKWFL 651
              L  KK   Y + +  L +  I    S  VL RLF+    + LL   L+   ES WF 
Sbjct: 153 DDSLDVKKTI-YTIAIKYLENSGIDKEASCLVLSRLFSRDDGLDLLLGFLHH-CESSWFK 210

Query: 652 GSLFYSLGVSVKMNILL 702
            S+FY +G    ++  L
Sbjct: 211 RSIFYKIGCLFSLSSFL 227


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -3

Query: 347 VSPRSLL*SRVVPFKNPSHSCI*AFQSISVYGTFSTINILSTSSVTIISNDTNKSCDGFS 168
           +SP  +    +V  K  S   I A  ++S  G+FS +    +S+++ +SND   S DG S
Sbjct: 211 LSPEFIKKPSMVDHKRDSE--INAVTAVSADGSFSPLTETLSSTISTLSND---SLDGLS 265

Query: 167 SK 162
           S+
Sbjct: 266 SQ 267


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 477 SFQNLFKSQKSASICSNF 530
           S++N FKS  SAS+ SNF
Sbjct: 121 SYKNEFKSSSSASVSSNF 138


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 456 LLITINFSFQNLFKSQKSASICSNFSYI 539
           ++ ++NFS +N F S +S S  S+ S I
Sbjct: 205 IMQSLNFSVENFFPSDESVSFSSSSSVI 232


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 372 LCVYLLFSLFNHKSRRKYKTCSIYIYRYLLITINFSFQNLFKSQKSAS 515
           LCV+  +SL  HK  R      +Y    +L+T+   F + F S K A+
Sbjct: 314 LCVFFPYSLIGHKELR-----FVYPISPILLTLAGKFFSSFSSWKRAA 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,270
Number of Sequences: 5004
Number of extensions: 66661
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)