Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I12
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...   182   2e-46
06_03_0806 + 24788441-24789049                                         31   1.2  
02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656...    30   2.7  
04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251     29   3.6  
10_06_0010 + 9574265-9574524,9574629-9574956,9576663-9576788,957...    29   4.8  

>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score =  182 bits (444), Expect = 2e-46
 Identities = 92/207 (44%), Positives = 135/207 (65%)
 Frame = +1

Query: 235 LIVEKVPYTEIDWKAYMQECEGFLNGTTLDYSKLRGDTGPLVYPAGFVYIYSFLYLITNQ 414
           LIV  VPYT+IDW AYM + + F+ G   DY+K+ GDTGPLVYPAGF+Y+YS + L+T  
Sbjct: 35  LIVVFVPYTKIDWDAYMAQVDAFVEGER-DYTKIEGDTGPLVYPAGFLYVYSAIKLLT-- 91

Query: 415 GENIKLAQYIFIGIYLLQLTLVFRIYLKAKKVPPYVLILVILTSYRIHSIYVLRLFNDPI 594
              +  AQ +F  +Y++ L+LV  +Y+K + +P + L L+ L S R+HSI+VLRLFND  
Sbjct: 92  AGQVFPAQILFGVLYIVNLSLVLLMYVKTEVLPRWALGLLCL-SKRVHSIFVLRLFNDCF 150

Query: 595 AVLLLYVSLNFFLESKWFLGSLFYSLGVSVKMNILLYAPAXXXXXXVNLGLKLTLVQLLI 774
           A+  L+ ++   +  KW+LG + +S  VS+KMN+LL+AP+        + +K     LL 
Sbjct: 151 AMTFLHAAMVLIMYHKWYLGLVIFSAAVSIKMNVLLFAPSLLLLMLKAMSIKGVFFALLG 210

Query: 775 CGSVQVXLGLPFLISNPVSYIKGXLTL 855
             ++QV LG+PFL+S+PV YI     L
Sbjct: 211 AAALQVLLGMPFLLSHPVEYISRAFNL 237


>06_03_0806 + 24788441-24789049
          Length = 202

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 421 NIKLAQYIFIGIYLLQLTLVFRIYLKAKKVPPYVLILVILTSY 549
           N KLA   +I IYLL +     IYL +  +  Y+L ++ L+ Y
Sbjct: 155 NEKLAHNCYISIYLLSIIYYLSIYLLSIYLSIYLLSIIYLSIY 197


>02_05_0704 -
           31064996-31065214,31065306-31065466,31065583-31065660,
           31066560-31066651,31066775-31066833,31066924-31067010,
           31067118-31067214,31067311-31067495,31067593-31067665,
           31067725-31067805,31067948-31068048,31068133-31068246,
           31068391-31068488,31069789-31069915
          Length = 523

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
 Frame = +1

Query: 334 LRGDTGPLVYPAGFVYIYSFLYLITNQGENIK------LAQYIFIGIYLLQLTLVFRIYL 495
           +RG  G L+  +    I+ F  L  N    +       L   +  G+Y L    V     
Sbjct: 119 MRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSAAPLVMLVGFGLYELGFPSVKLTAQ 178

Query: 496 KAKKVP---PYVLILVILTSYRIHSIYVLRLFNDPIAVL 603
            AK V    P +++LVI   Y  H+I++++   D  AVL
Sbjct: 179 VAKCVEIGLPELILLVIFAMYLPHAIHMMKSIFDRFAVL 217


>04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251
          Length = 364

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 418 ENIKLAQYIFIGIYLLQLTLVFRIYLKAKKVPPYVLILVILTSYRIHS---IYVLRLFND 588
           E + L   I    + ++ T++  I+         VL + I +SY +HS     V  +FN 
Sbjct: 253 EGVGLGGCIVQANFKVRATVIMAIFFSLTAPVGIVLGIAISSSYNVHSSTAFVVEGVFNS 312

Query: 589 PIAVLLLYVSL 621
             A +L+Y+SL
Sbjct: 313 ASAGILIYMSL 323


>10_06_0010 +
           9574265-9574524,9574629-9574956,9576663-9576788,
           9576948-9577067,9577350-9577562,9577653-9577764,
           9578033-9578217,9578310-9578660,9578826-9579383
          Length = 750

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +3

Query: 348 WPARVPSRLCVYLL--FSLFNHKS-RRKYKTCSIYIYRYLLITIN-FSFQNLFKSQKSAS 515
           WP R P  LC  LL  + L +++S   K      YI   L I  N + F    +  +SA 
Sbjct: 538 WPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSAR 597

Query: 516 ICSN 527
            C N
Sbjct: 598 ACWN 601


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,595
Number of Sequences: 37544
Number of extensions: 337943
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)