Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I12
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.90 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.90 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 662 NKLPKNHLDSKKKFNDTYNNST 597
           N++  N LD+++  +D YNN+T
Sbjct: 185 NEIKLNSLDTEQILDDMYNNNT 206


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 417 RKYKTCSIYIYRYLLITINFSFQNLFKSQKSASICSNFSYINIL*NTFYLCAET 578
           +KY  C    Y  +   I    + LF +      C + SY+++L   FYL A++
Sbjct: 212 KKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVL--AFYLPADS 263



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 783 CASXIRFTFFNQQSCFI 833
           C   +R+  F+QQ+CF+
Sbjct: 145 CEIDVRYFPFDQQTCFM 161


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 305 KNPSHSCI*AFQSISVYGTFSTINILSTSSVTI 207
           KN +  C+   QS+ V    +TIN  +TS +++
Sbjct: 817 KNINDHCVTTEQSVVVTNVTTTINTPTTSVISM 849


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 285 HISFPIYFSVRHLFHDQYI 229
           H   PIY S  HL H Q +
Sbjct: 64  HRDLPIYQSHHHLHHHQVL 82


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 403 LNKEKSKYTQSLLGTRAGQCHHEACYNLE*YHLKI 299
           L +  SK +Q+ +    GQ H + C      HLK+
Sbjct: 358 LERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKV 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,012
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)