Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I10
         (778 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   2.0  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   6.0  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   8.0  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 238 FRPSYFRCFPHGLTPDNLNKYRI 170
           F+  Y RC   G+ PDN  K R+
Sbjct: 440 FKKVYQRCLDTGVFPDNWKKQRL 462


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 411  SLFSNYADNKCSHDQRTSNPP 349
            S F N+ D  C   +  S+PP
Sbjct: 1570 SQFDNFLDESCQEGEGASSPP 1590


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 469 LTPKIDPAMDLDDDENGPALP 531
           L P+IDP+  + D  +GP  P
Sbjct: 63  LAPQIDPSYSIMDTASGPQGP 83


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,381
Number of Sequences: 2352
Number of extensions: 16730
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)