Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I09
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    29   2.8  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   3.7  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    28   4.9  
Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical...    27   8.5  
AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 488 HTHNRILEKRI*RH*Y*LNSLT*YFIKYIIIAHECILIFILN*CV 622
           + HN+I EKR+  + Y +NS    +  Y+     CI+IF    CV
Sbjct: 207 YIHNKIREKRMVHNVYNINSRYKSYENYLATKSVCIVIFSQILCV 251


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 524 VKYVFLIFDCVCVCVCLFHNYSNSHIFD 441
           V++++++   VC+C+C+   YS SH+ D
Sbjct: 66  VRFLWVVVSLVCICLCM---YSFSHVKD 90


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 524 VKYVFLIFDCVCVCVCLFHNYSNSHIFD 441
           V++++++   VC+C+C+   YS SH+ D
Sbjct: 66  VRFLWVVVSLVCICLCM---YSFSHVKD 90


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 518 YVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYD 417
           Y  L + C+C+ VCLF  Y+ S +++YI   + D
Sbjct: 101 YTSLHWLCLCIPVCLF-VYTLSEVYNYIMPDNRD 133


>Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical
           protein K06B4.3 protein.
          Length = 83

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 515 VFLIFDCVCVCVCLF---HNYSNS-HIFDYIKKHS 423
           VF++  C C C CLF   +N++NS + +D I   S
Sbjct: 48  VFIVCCCCCCCGCLFRSNNNFNNSNNSYDNISNDS 82


>AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 533 TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 396
           T + KY+ L F    +C+C+F+  S   + D    +  D  ++ I+
Sbjct: 44  TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88


>AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 533 TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 396
           T + KY+ L F    +C+C+F+  S   + D    +  D  ++ I+
Sbjct: 44  TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,921
Number of Sequences: 27780
Number of extensions: 167108
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)