Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I07
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    93   3e-20
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    30   0.22 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   2.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   3.7  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   4.8  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   6.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   8.4  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 43/56 (76%), Positives = 48/56 (85%)
 Frame = +3

Query: 333 FLFTSESVGEGHPDKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLXCGEITS 500
           FLFTSESVGEGHPDK+CDQISDAIL A L  DP +KVACET +KTGMV+  GEIT+
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITT 60


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 103 FALNIIIICTYIYFEAHI*IFCTTAFLCLNF 11
           F  NII++  Y+Y      I CTT  LC +F
Sbjct: 31  FLKNIIVLSNYLYLLYKAWIVCTTISLCCDF 61


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 237 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 407
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 369 PDKMCDQISDAILXA-HLNQDPDAKVACETITKTGM 473
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 389 LVAHFVWMTLANRFRCEQKY*SIFHII 309
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 316 WKMDQYFCSHRNLLARVIQTKC 381
           W + + F S+R L A  I+T C
Sbjct: 27  WNISKTFLSYRTLTALAIETSC 48


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 241 LTLNSECRRLQK*MDTRKPTDTVMIWKMDQYFCSH 345
           L+LNS CR L +   TR   +T    K+DQ F  H
Sbjct: 790 LSLNSMCRYLSRVTGTRLTNETN---KLDQDFTVH 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,734
Number of Sequences: 5004
Number of extensions: 42738
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)