Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I06
         (501 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    60   4e-08
UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1...    32   6.3  
UniRef50_Q4YGX6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.3  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 59.7 bits (138), Expect = 4e-08
 Identities = 26/50 (52%), Positives = 32/50 (64%)
 Frame = +2

Query: 158 TPLVAPMLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 307
           TP+VAPML                  YYGN+VAGS++SQLT+AAM+APTP
Sbjct: 25  TPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74


>UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1;
            n=2; Caenorhabditis|Rep: Laminin related. see also
            lmb-protein 1 - Caenorhabditis elegans
          Length = 1067

 Score = 32.3 bits (70), Expect = 6.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 100  CISGKRGRRC--CNXWHWGSVDSISGSHARFQLSGN 201
            C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 974  CKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>UniRef50_Q4YGX6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 116

 Score = 31.9 bits (69), Expect = 8.3
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +1

Query: 88  GASRCISGKRGRRCCNXWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFSGRQHC 267
           G+  C++G    RC      G    ISGSH+    +      + RC TS LR  +G   C
Sbjct: 14  GSHSCVTGNH--RC----ETGDHSCISGSHSCVTGNHICETGNHRCVTSNLRCETGSHSC 67

Query: 268 VTVDCCCHGSPHA 306
           VT +  C    H+
Sbjct: 68  VTSNHRCETGDHS 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,284,679
Number of Sequences: 1657284
Number of extensions: 6048038
Number of successful extensions: 12885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12878
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)