Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I06
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       30   1.2  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   3.7  
03_06_0194 + 32249846-32250562                                         27   8.5  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 209 LPLFPLS*NRAWEPL---MESTDPQCHXLQHRRPRLPL 105
           LP  P      W PL   M  T P C  L++ RPRLPL
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +1

Query: 175 HARFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 288
           + R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 15  YPRLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>03_06_0194 + 32249846-32250562
          Length = 238

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 118 GRRCCNXWHWGSVDSISGSHARFQLSGNSGRK 213
           GR     W  G+V + +G+H R + S + G+K
Sbjct: 153 GRLRVQGWRAGAVKNAAGAHGRQRRSSSGGKK 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,444
Number of Sequences: 37544
Number of extensions: 186892
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)