Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I06
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.20 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   0.47 
U23513-5|AAP68948.1|  214|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U23513-4|AAP68947.1|  322|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        28   4.4  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    28   4.4  
AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical ...    27   5.8  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 100  CISGKRGRRC--CNXWHWGSVDSISGSHARFQLSGN 201
            C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 974  CKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 295  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS-AIXYSTA 122
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+ ++ + TA
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPTMSLTHHTA 954


>U23513-5|AAP68948.1|  214|Caenorhabditis elegans Hypothetical
           protein D2021.2b protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +1

Query: 148 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 303
           G V +    H  F     +G +H +  C T  +RK    +HC     C +   H
Sbjct: 23  GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76


>U23513-4|AAP68947.1|  322|Caenorhabditis elegans Hypothetical
           protein D2021.2a protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +1

Query: 148 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 303
           G V +    H  F     +G +H +  C T  +RK    +HC     C +   H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184


>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/75 (28%), Positives = 28/75 (37%)
 Frame = +1

Query: 58  ARIXQKXKAHGASRCISGKRGRRCCNXWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSI 237
           A++  +   HG  RC +G  G  C N    G   +     A  Q S   G   +RC    
Sbjct: 149 AKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSCADGFNGTRC---- 204

Query: 238 LRKFSGRQHCVTVDC 282
             +   R  CV  DC
Sbjct: 205 -EQCLPRAGCVNGDC 218


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/75 (28%), Positives = 28/75 (37%)
 Frame = +1

Query: 58  ARIXQKXKAHGASRCISGKRGRRCCNXWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSI 237
           A++  +   HG  RC +G  G  C N    G   +     A  Q S   G   +RC    
Sbjct: 149 AKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSCADGFNGTRC---- 204

Query: 238 LRKFSGRQHCVTVDC 282
             +   R  CV  DC
Sbjct: 205 -EQCLPRAGCVNGDC 218


>AL117204-8|CAB55123.1|  205|Caenorhabditis elegans Hypothetical
           protein Y116A8C.17 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 61  RIXQKXKAHGASRCISGKRGRRC 129
           R+ +K KA   S C+S KRG+ C
Sbjct: 85  RLKKKEKAFKTSLCLSHKRGKTC 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,034,939
Number of Sequences: 27780
Number of extensions: 144548
Number of successful extensions: 270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)