Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_I05
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 34 0.022
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 28 1.9
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 27 2.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.3
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 27 4.4
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 5.8
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 26 5.8
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 7.7
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 34.3 bits (75), Expect = 0.022
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 537 PIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVP 692
P+VF+ KPD ++ L+E E ++ D E + L F +RI+ V P+P
Sbjct: 291 PVVFSTEKPDPRKASLLPLSEEEFEKGDVDELSAL--PEFRARILPVIGPMP 340
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 552 DSKPDL--LTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSG 713
D KP L L + ++HL++ D K N LIT +F +I + G + K ++ +G
Sbjct: 270 DCKPLLKQLLETLLHLHKQGVTHRDIKPENILITNDFHLKISDFG--LAKVIHGTG 323
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 528 LPQPIVFTDSKPDLLTK---EIIHLNEMETDENDEKEFNDLITKNFMSRIME 674
LP + FT DLL + E IHL E +E EKE I + + +E
Sbjct: 25 LPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALE 76
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 269 LHSKHSTLSVKKTSQDARGHHGTSSSHRDMCYRQIPRGYNSADNATNYEL 418
+++KH+ L +++T R +H D PR S D++ Y++
Sbjct: 2082 IYTKHNDLRLQETVHSTRAFFEDLDTHADTLTFDFPRVVFSTDSSQYYDI 2131
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 708 SGGSNKAEINLKHANIPAPHSDINSARPIVQPQSFNI-PDEPXEIL 842
S G K ++LKH +P+P A P +P+ + P EP E L
Sbjct: 153 SPGKEKNTLDLKHCLLPSPE---YKAPPAKKPEDYEASPGEPVEPL 195
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 465 NVIIPKYMIPHYIKYVDKPGFLPQPIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLI 644
++I Y + + K V K FL P T K L+ K++ H NE +E N+LI
Sbjct: 189 DIIHEIYNVGSHFKEVTK--FL-WPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELI 245
Query: 645 TK 650
K
Sbjct: 246 KK 247
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.8
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +3
Query: 453 NYFRNVIIPKYMIPH--YIKYVDKPGFLPQPIV-----FTDSKPDLLTKEIIHLNEMETD 611
NYFRNV+ YI++++ Q +V + DS +LL+ EII ++
Sbjct: 330 NYFRNVLYQTERSKSLGYIRHIEHLQVFRQAMVNYYRLYEDSLSELLSGEIITEATLKIV 389
Query: 612 ENDEKEFNDLITK 650
++ K+F +L K
Sbjct: 390 KDRRKKFLELCVK 402
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 540 IVFTDSKPDLLTKEII--HLNEMETDENDEKEFNDLI 644
+ F S D T E++ HL+ ++ DE++ K FN+++
Sbjct: 132 LAFLISDTDDNTLEVLKQHLDAIQNDEDESKHFNNVL 168
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 92 NKLYPKSEYKFEQDHLYSKHQKTRLN 169
N YPKS + F++ H +H+K N
Sbjct: 488 NSPYPKSSHHFDERHGGDRHEKNLSN 513
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 356 MCYRQIPRGYNSADNATNYELR 421
+CYR P Y SA+N T YEL+
Sbjct: 1090 ICYRGSP-DYISAENYTRYELK 1110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,644,220
Number of Sequences: 5004
Number of extensions: 81334
Number of successful extensions: 264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -