Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_I05
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0128 - 15017499-15017909 31 1.1
08_02_1252 + 25595776-25596564 29 4.6
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 29 4.6
10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714 29 6.1
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 29 6.1
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 29 6.1
05_04_0123 + 18210069-18213737 28 8.1
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 28 8.1
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 28 8.1
>10_08_0128 - 15017499-15017909
Length = 136
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 303 RRPKMHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSP 449
+ +M + V + + A A+ PG +T + P T + GEE+ Q+P P
Sbjct: 25 KNSQMKVLVAVDDRSTAVAATARWPGCSTTSSSPATGDGGEEE-QVPRP 72
>08_02_1252 + 25595776-25596564
Length = 262
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 301 LHTERAVFTVKLHQGAH*TAPIDTRPHENSSFCDKT 194
LH RAV T++LH A + P+ R H +S ++
Sbjct: 167 LHRARAVSTLRLHHAASASLPLPQRRHRAASISSQS 202
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 429 DKQIPSPMNYFRNVIIPKYMIPHYIKYVDKPGFLPQPIVFT--DSKPDLLTKEIIHL 593
D I +P NV + Y P Y V++ F PQP V + + K +L K + HL
Sbjct: 166 DASIQTPEYRPINVFVNFYSEPEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQHL 222
>10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714
Length = 193
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 315 MHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSPMN 455
M + + L+AA+ + A + A P +P TM + +IP +N
Sbjct: 1 MEHIRSFLLAALAVVVAAATAAAAGLPPLPSTMPADVPQPEIPPCLN 47
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 206 KGRIFMW-AGIDRRCSVRALMELHSKHSTLSVKKTSQDARGHHGTSSSHRDMC 361
KG + +W DR SVR +LH K+ ++ + + ++ ++ R++C
Sbjct: 198 KGLLVLWDVSEDRAISVRGYGDLHMKNQITGAQRDAGEDEDNNISAEEEREIC 250
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 690 PKQVYSSGGSNKAEINLKHANIPAPHSDINSARPIV 797
P+Q+ GS A +N A +P+P+S N+ R +
Sbjct: 368 PRQITIDDGSPVASMNFDEAELPSPYSCENAIRAAI 403
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 603 ETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSN 722
+ +EN F +L+ ++F + ++GS ++VY G S+
Sbjct: 450 DIEENGNHVFWELVWRSFFQNVKQIGSIFQRKVYRYGQSD 489
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 612 ENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNK 725
END +EF + N + + V + GGSNK
Sbjct: 121 ENDMREFEEFYNSNSVEKFPRVFGMTASPIIGKGGSNK 158
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 534 QPIVF---TDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMS 662
Q IVF D PD +T +I+ + +++ +++F+DL T++ +S
Sbjct: 265 QKIVFQGEADEAPDTVTGDIVFVLQLKDHPKFKRKFDDLFTEHTIS 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,815,588
Number of Sequences: 37544
Number of extensions: 537530
Number of successful extensions: 1412
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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