Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I05
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-7|CAA93429.2|  508|Caenorhabditis elegans Hypothetical pr...    34   0.15 
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    32   0.59 
Z75955-9|CAB00123.1|  406|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    30   2.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        30   2.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   7.2  
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    28   7.2  
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    28   7.2  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z69385-7|CAA93429.2|  508|Caenorhabditis elegans Hypothetical
           protein ZK593.8 protein.
          Length = 508

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/112 (22%), Positives = 43/112 (38%)
 Frame = +3

Query: 309 PKMHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSPMNYFRNVIIPKYM 488
           P+ +++TTV++ ++ +  I +        T+   + +  + K  P P N      I    
Sbjct: 37  PQGYSLTTVIIISVLVSLICQHFVPYAVSTLHTVIKNSPKQKSSPPPSNRLNIGFISGNS 96

Query: 489 IPHYIKYVDKPGFLPQPIVFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLI 644
              Y   V KP FL  PI     K       ++     E  END  +  + I
Sbjct: 97  PEKYAPAVQKPTFLVDPIYDEKWKGIQTAVPVMSTQTDEKRENDPAKVKEAI 148


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
 Frame = +3

Query: 573 TKEIIHL-NEMETDENDEKEFNDLITKNFMSRIMEVGSPV-PKQVYSSGG--SNKAEINL 740
           TK I+ + NE E+D +D+K+ +  +TK   ++  +V  PV P  + S  G  S+ +  + 
Sbjct: 129 TKTIVDIENEFESDGDDDKQPSVPLTK---TKSFQVSKPVQPSLIRSQSGNLSSSSSTSS 185

Query: 741 KHANIPAPHS-DINSARPIVQPQSFNIPD 824
             +N   P S  + + RP  QP  + I D
Sbjct: 186 SSSNSSDPLSFRLLTCRPFEQPTVYLIAD 214


>Z75955-9|CAB00123.1|  406|Caenorhabditis elegans Hypothetical
           protein R07B7.14 protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 561 PDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSS 710
           PD L+  +  +  ME  + +EK FN +I ++F S +  + SP+  ++ SS
Sbjct: 358 PDRLSSILSIMPIMENQQKEEKSFN-VILRSFYSNVSILVSPLYDEIMSS 406


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +3

Query: 405  QTMNSGEEDKQIPSPMNYFRNVIIPKYM---IPHYIKYVDKPGFLPQPIVFTDSKPDLLT 575
            Q +     D   P PM  F  VI+P  +    P  I   D   F  QP+V +    D L 
Sbjct: 1174 QPLKDVRRDPNFPEPMIVFGEVILPSALELSPPLIINLFDARAFNRQPLVGSCLVSD-LH 1232

Query: 576  KEIIHL-NEMETDENDEKEFNDL-ITKNFMSRIMEVGSP 686
            K + H+  ++++D  +  E  DL IT+ F   I  V  P
Sbjct: 1233 KYVSHIVPKVKSDHAERWEQLDLVITEEFDQIIRMVRVP 1271


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +3

Query: 405  QTMNSGEEDKQIPSPMNYFRNVIIPKYM---IPHYIKYVDKPGFLPQPIVFTDSKPDLLT 575
            Q +     D   P PM  F  VI+P  +    P  I   D   F  QP+V +    D L 
Sbjct: 1174 QPLKDVRRDPNFPEPMIVFGEVILPSALELSPPLIINLFDARAFNRQPLVGSCLVSD-LH 1232

Query: 576  KEIIHL-NEMETDENDEKEFNDL-ITKNFMSRIMEVGSP 686
            K + H+  ++++D  +  E  DL IT+ F   I  V  P
Sbjct: 1233 KYVSHIVPKVKSDHAERWEQLDLVITEEFDQIIRMVRVP 1271


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 275  SKHSTLSVKKTSQDARGHHGTSSSHRDMCYRQIPRGYNSADNATN 409
            +K S+ S    S D R HH  ++SH     R +  G  S D   N
Sbjct: 2303 TKQSSASSVTASVDTRHHHSAATSHSGEIRRSLVHGPGSLDIGIN 2347


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 275  SKHSTLSVKKTSQDARGHHGTSSSHRDMCYRQIPRGYNSADNATN 409
            +K S+ S    S D R HH  ++SH     R +  G  S D   N
Sbjct: 2303 TKQSSASSVTASVDTRHHHSAATSHSGEIRRSLVHGPGSLDIGIN 2347


>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 555 SKPDLLTKEII-HLNEMETDENDEKEFNDLITKNFMSR 665
           S+  LL   ++ HL +M   +++EK   +LITK F+ R
Sbjct: 77  SESSLLAVNLLEHLKQMNCGQSNEKRCLELITKTFIQR 114


>Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 567 LLTKEIIHLNEMETDENDEKEFNDLITKNFMSR 665
           LL ++ ++  + E +E+DE+ FN  ++ NF +R
Sbjct: 285 LLGEQFVYQPDEEDEEDDEEVFNVSVSSNFSTR 317


>Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 567 LLTKEIIHLNEMETDENDEKEFNDLITKNFMSR 665
           LL ++ ++  + E +E+DE+ FN  ++ NF +R
Sbjct: 285 LLGEQFVYQPDEEDEEDDEEVFNVSVSSNFSTR 317


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 741 KHANIPAPHSDINSARPIVQPQSF-NIPDEPXEIL 842
           K A++  P  D N+ RP    +S  NIP+EP E++
Sbjct: 37  KPASLSPPPDDENTIRPPSSSESSENIPEEPQELI 71


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 588 HLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNKAEINLKH 746
           H NE    + +    ++ +T+N M+ ++    P P+ V  S G     +N +H
Sbjct: 111 HQNEQTHQKTNGSAVHNQLTRNIMNEVLTKVGPYPQIVLPSNGFWMDGVNQQH 163


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 227 AGIDRRCSVRALMELHSKHSTLSVKKTSQDARGHHGTSSSHRDMCYRQIPRG 382
           A I   C   A  E+H K  T+ +KK +   +G     +      ++ +P G
Sbjct: 347 ANITNLCQPHAYCEMHDKEHTMELKKYNFHNKGQSVLRTVSMSRSFKSLPTG 398


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 588 HLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNKAEINLKH 746
           H NE    + +    ++ +T+N M+ ++    P P+ V  S G     +N +H
Sbjct: 181 HQNEQTHQKTNGSAVHNQLTRNIMNEVLTKVGPYPQIVLPSNGFWMDGVNQQH 233


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 588 HLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNKAEINLKH 746
           H NE    + +    ++ +T+N M+ ++    P P+ V  S G     +N +H
Sbjct: 112 HQNEQTHQKTNGSAVHNQLTRNIMNEVLTKVGPYPQIVLPSNGFWMDGVNQQH 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,198
Number of Sequences: 27780
Number of extensions: 469804
Number of successful extensions: 1166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)