Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I04
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...   163   1e-41
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.1  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   4.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   6.3  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.3  

>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score =  163 bits (397), Expect = 1e-41
 Identities = 77/115 (66%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
 Frame = +1

Query: 115 NATXKRALVFKAAGQAYAQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIIL 294
           N   KR L +   GQ YAQVTK LGNGR+EA CFDG+KRL HIRGKLRKKVWINQGDIIL
Sbjct: 19  NENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIIL 78

Query: 295 IGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE-DIEF 456
           + LR++QD K DVILKYT DEAR LK  GE PET +INET  +  +G D+ D EF
Sbjct: 79  LSLREFQDEKGDVILKYTADEARTLKNQGELPETAKINETDTFGAEGEDDLDFEF 133


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 313 QDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGL 438
           ++ K++V ++YT D A      GE   ++   E V+YS+  L
Sbjct: 511 RNRKSNVKIEYTEDFATGFAISGEISHSINNLEFVLYSLSSL 552


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 173 SQXCSVMAAWRPCALMASNACVTSEGNYEK 262
           S  CS+ A W   +L+++  CV + G  ++
Sbjct: 242 SSICSISANWSTLSLLSTEGCVYAFGRCDR 271


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 EAMCFDGIKRLCHIRG 249
           +A C +G + LCH+ G
Sbjct: 623 DAQCLEGFRALCHLEG 638


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 407 LMRTVSGNSPYVFRFLASSGVYFKMTSAF 321
           L++ V  N  ++F  LA SGV FK+ + F
Sbjct: 539 LIKFVWRNKVFLFGILALSGVIFKLINFF 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,490
Number of Sequences: 5004
Number of extensions: 32484
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)