Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_I04
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0256 + 13528331-13528765 156 1e-38
02_02_0566 + 11567415-11567843 153 1e-37
02_05_1082 - 33976038-33978035 33 0.13
03_01_0098 - 773958-774144,775776-775902,776013-776088,776208-77... 33 0.17
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 31 0.69
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 28 4.9
06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392 28 6.5
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 27 8.5
>06_02_0256 + 13528331-13528765
Length = 144
Score = 156 bits (378), Expect = 1e-38
Identities = 75/106 (70%), Positives = 84/106 (79%)
Frame = +1
Query: 127 KRALVFKAAGQAYAQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLR 306
KR LVFK GQ YAQVT+ LGNGR EA+C DG KRLCHIRGK+ KKVWI GDIIL+GLR
Sbjct: 23 KRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIILVGLR 82
Query: 307 DYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 444
DYQD KADVILKY DEAR LK YGE P+T+R+NE V VDG ++
Sbjct: 83 DYQDDKADVILKYMNDEARLLKAYGELPDTLRLNEGV--DVDGPED 126
>02_02_0566 + 11567415-11567843
Length = 142
Score = 153 bits (371), Expect = 1e-37
Identities = 73/107 (68%), Positives = 79/107 (73%)
Frame = +1
Query: 127 KRALVFKAAGQAYAQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLR 306
KR LVFK GQ YAQV + LGNGR EA C DG KRLCHIRGK+ KKVWI GDI+L+GLR
Sbjct: 23 KRELVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLR 82
Query: 307 DYQDAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDED 447
DYQD KADVILKY DEAR LK YGE P+ VR+NE VV D D
Sbjct: 83 DYQDDKADVILKYMNDEARLLKAYGEIPDHVRLNEGVVDEDDAAAHD 129
>02_05_1082 - 33976038-33978035
Length = 665
Score = 33.5 bits (73), Expect = 0.13
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 337 LKYTPDEARNLKTYGEFPETVRINETVV 420
+K+ PD+ ++LK YG++P +++ + T V
Sbjct: 229 IKHNPDDVKSLKMYGKYPRSIKCDPTTV 256
>03_01_0098 -
773958-774144,775776-775902,776013-776088,776208-776321
Length = 167
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 154 GQAYAQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILI 297
G++ QV G+ +E M G+K L K +K WI G+ +++
Sbjct: 22 GESIMQVLALRGSNVIEVMDAKGVKSLALFPAKFQKSFWIKNGNFVVV 69
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 262 KVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE-TVRINETVVYSVDGL 438
KV + +GD++ LR AD+ + RN ++Y E + +VRI T V+S D +
Sbjct: 244 KVEVEEGDVVGKALRKCARISADLRQELYGSSTRNCESYAEIDDSSVRI-VTQVWSFDSM 302
Query: 439 D 441
D
Sbjct: 303 D 303
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 130 RALVFKAAGQAYAQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRD 309
+ +V + +A + K L GR+ C + + H+R ++K VW + D +LI
Sbjct: 105 KQMVILHGDRKWATIAKSLP-GRIGKQCRE--RWTNHLRPDIKKDVWTEEDDRMLIEAHK 161
Query: 310 YQDAKADVILKYTPDEARN 366
+ VI + P + N
Sbjct: 162 TYGNRWSVIARCLPGRSEN 180
>06_01_0447 + 3159092-3159543,3159699-3159825,3160640-3161392
Length = 443
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 238 HIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARN 366
H+R ++K W + DI+LI K I K+ P N
Sbjct: 187 HLRPNIKKDTWSEEEDIVLIQTHKEVGNKWAEIAKHLPGRTEN 229
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 274 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRIN 408
NQ D ++ +Y+DAK VI YT D YG + T N
Sbjct: 310 NQHDFVI----EYEDAKFFVIKSYTEDHVHKSIKYGVWASTASGN 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,605,432
Number of Sequences: 37544
Number of extensions: 217123
Number of successful extensions: 423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -