Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I04
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...   146   1e-35
Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82093-6|CAB05014.1|  256|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score =  146 bits (353), Expect = 1e-35
 Identities = 67/99 (67%), Positives = 75/99 (75%)
 Frame = +1

Query: 115 NATXKRALVFKAAGQAYAQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIIL 294
           N   KR L  K  GQ Y QV+K LGNGR++  CFDG +R+CHIRGKLRKKVWIN GDIIL
Sbjct: 19  NDFMKRELDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIIL 78

Query: 295 IGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINE 411
           +GLRDYQD K DVILKYTPDEAR LK  G  PE  ++NE
Sbjct: 79  VGLRDYQDDKGDVILKYTPDEARRLKNEGLIPENAKLNE 117


>Z70783-8|CAA94859.1|  175|Caenorhabditis elegans Hypothetical
           protein ZK856.11 protein.
          Length = 175

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
 Frame = +1

Query: 118 ATXKRALVFKAAGQAY--------AQVTKXLGNGRLEAMCFDGIKRLCHIRGKLRKKVWI 273
           AT KR +  K   + Y        AQV +  GN   E +  +G   +  +  K RK VW+
Sbjct: 4   ATKKRYITNKVGSEFYELVDEDIIAQVRQSRGNNLHEVLDQNGDSYVVSMPTKFRKSVWL 63

Query: 274 NQGDIILI-GLRDYQDAKADVILKYTPDEARNLKTYGEFP 390
            +   +++  + +    K ++      D    ++  G++P
Sbjct: 64  RRDQFVVVRPITEGDKVKGEIEYILDQDNVLYIRELGKWP 103


>Z82093-6|CAB05014.1|  256|Caenorhabditis elegans Hypothetical
           protein ZK39.7 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 137 WSLRQPDKRTPKSQXCSVMAAWRPCAL 217
           W+  QPD +  +SQ C V+ A R  ++
Sbjct: 161 WNTNQPDNKDSRSQQCLVLLASRASSI 187


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 56  QTCRKTKVKAAKIGGAASTQMQLXNVRWSLRQPDKRTP 169
           +T RKTK++  KI  +   + ++ + +WS+ +  KR P
Sbjct: 104 KTPRKTKLRDGKIIDSNDQKQEVSSRKWSVGRSKKRPP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,390
Number of Sequences: 27780
Number of extensions: 186107
Number of successful extensions: 425
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)