Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I04
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 243 PRETTKKSVDKSRRHNINRPTRLSRCES 326
           PR T  K    +R  +  RP+R + CES
Sbjct: 385 PRSTHLKVSGINRVGSTRRPSRRNSCES 412


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 101 AASTQMQLXNVRWSLRQPDKRTPKSQXCSVMAAWRPCALMAS 226
           A+S  + +  + +  R PD+    S    +   W PC L  S
Sbjct: 337 ASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMS 378


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 101 AASTQMQLXNVRWSLRQPDKRTPKSQXCSVMAAWRPCALMAS 226
           A+S  + +  + +  R PD+    S    +   W PC L  S
Sbjct: 337 ASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMS 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,680
Number of Sequences: 438
Number of extensions: 2265
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)