Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_I01
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine re...    28   2.4  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    26   9.5  
AC006742-8|ABB51175.1|  261|Caenorhabditis elegans Hypothetical ...    26   9.5  
AC006742-2|AAF60497.3|  261|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine
           receptor, class v protein22 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = +2

Query: 5   SFVTAICCXFHFALNSKPCSLSVLQAVTKSFLNXXHXSXLGLLFNR*A**FHYXILTPSP 184
           S V +I     F  N KP  +SV+  +   F++    S   + F+         IL   P
Sbjct: 130 SIVKSISNITRFMHNLKPWKISVIYWIPPLFISAVLFSNPEIRFDTP----ERMILVMDP 185

Query: 185 *RASYVECTVTSMYYLSILHTIFCDLIIEMLIKIKQRN 298
              SY+ CT  ++     +  + C +I  +++K  + N
Sbjct: 186 ---SYISCTTRTLSVFVSISCVICIVIYGLIVKFIREN 220


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 155 FHYXILTPSP*RASYVECTVTSMYYLSILHTIF 253
           FH+ ILT  P R S V   +T++  + IL   +
Sbjct: 56  FHFIILTRKPIRTSSVNIIMTAIAIVEILSLFY 88


>AC006742-8|ABB51175.1|  261|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.1 protein.
          Length = 261

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 162 MXSLLLVLSAQAMLNVR*PQCIICLFY 242
           M SLLLV  +Q  L +  PQ I+CL +
Sbjct: 1   MISLLLVFLSQISLILGAPQTILCLIH 27


>AC006742-2|AAF60497.3|  261|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.5 protein.
          Length = 261

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 162 MXSLLLVLSAQAMLNVR*PQCIICLFY 242
           M SLLLV  +Q  L +  PQ I+CL +
Sbjct: 1   MISLLLVFLSQISLILGAPQTILCLIH 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,091,233
Number of Sequences: 27780
Number of extensions: 69170
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)