Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H24
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      33   0.062
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    30   0.33 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   1.0  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    29   1.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    28   1.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   5.4  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 23/84 (27%), Positives = 45/84 (53%)
 Frame = +1

Query: 349 DANEAALTSIITGYHQRITKLEEEKYDREMEVARKGLEISDLNSQVNDLRGKFVKPTLKK 528
           +AN AAL S+     Q+     +++Y R++E  +K +E +   S  ++   +    T+KK
Sbjct: 104 EANNAALESLNNSIKQK-----QDEYQRKLEELKKEIEYAKTKSLFHEREAQDAIETMKK 158

Query: 529 VSKYENKFAKLQKKAAEFNFRNQL 600
           + K + K + + KK+ E +  N+L
Sbjct: 159 M-KRDVKNSPIMKKSHEEDGDNKL 181


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +1

Query: 325  CGKPKNIDDANEAALTSIITGYHQRITKLEEEKYDREMEVARKGLEISDLNSQV--NDLR 498
            C K   ++D       S +   +QR T++ E     E+E+++  L++S  +  V   + R
Sbjct: 814  CDKQVQLEDTRYRQHLSELESLNQRFTEISERIPSAELEISKLQLDVSACDRLVAGEERR 873

Query: 499  GKFVKPTLKKVSKYENKFAKLQKKAAEFN 585
               +K  LK +     +   LQ K +  +
Sbjct: 874  ILQLKSDLKSIRNNNERKRNLQNKISNMD 902


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 337 KNIDDANEAALTSIITGYHQRITKLEEEKYDREMEVARKGLEISDLNSQVNDLRGKFVKP 516
           +++  A E   +++ + Y  +I  LE    + + E      +I++LNSQ+++L+ K  + 
Sbjct: 547 QDLKQAGENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEA 606

Query: 517 TLK---KVSKYENKFAKLQ 564
             K       +EN   K Q
Sbjct: 607 NKKYQELAISFENSNVKTQ 625


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +1

Query: 367 LTSIITGYHQRITKLEEEKYDREMEVARKGLEISDLNSQVNDLRGKFVKPTLKKVSKYEN 546
           L +I       +  L EEK  R+++ A   LE   L  ++NDL+   ++    K   YE 
Sbjct: 683 LVTITMSEKVELDLLREEKAIRQVQEAEDALERERLFREINDLQ---IQNAEMKEQVYEK 739

Query: 547 KFAKLQKKAAEFNFRNQ 597
           +    QK+    + RN+
Sbjct: 740 ESTISQKEVEITSLRNE 756


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +1

Query: 382 TGYHQRITKLEEEKY--DREMEVARKGLE-ISDLNSQVNDL 495
           T Y + +TKLEEE+Y  DR +E     ++ +  + +++N+L
Sbjct: 387 TPYEEAMTKLEEERYEFDRHIEATSWTIKSLKKIQNRINEL 427


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 387 LPSAYHQARRGEVRSRDGSGAQRARDLRPELPSQRPQRQIR-QAHTKEGFQIRKQIRQAP 563
           +P  +   R  E R   GSG     D R    S+RP+R+ R ++  +   + R++  +  
Sbjct: 14  IPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYRED 73

Query: 564 EEGRR 578
           E  RR
Sbjct: 74  ERPRR 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,821
Number of Sequences: 5004
Number of extensions: 32560
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)