Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H24
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333...    33   0.20 
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    29   3.2  
02_05_0263 - 27257150-27259213                                         29   5.6  
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    28   9.7  

>08_02_1322 +
           26131395-26131599,26132382-26132468,26133119-26133372,
           26133430-26133526,26133613-26133693,26133782-26133976,
           26134093-26134182,26134296-26134471,26134565-26134687,
           26134799-26134945,26135027-26135163,26135247-26135364,
           26135462-26135518
          Length = 588

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 325 CGKPKNIDDANEAALTSIITGYHQRIT-KLEEEKYDREMEVARKGLEISDLNSQVNDLRG 501
           C K   +D  N  AL      Y Q    +L E    + +E+     ++ D+     +L+ 
Sbjct: 483 CTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDNRQVLDVKLTYKNLKE 542

Query: 502 KFVKPTLKKVSKYENKFAKLQKKAAE 579
           K  +   K    Y N FAK+ K+ AE
Sbjct: 543 KVKEYNKKDAKFYSNMFAKMTKQPAE 568


>01_04_0124 +
           16359695-16359734,16360217-16360453,16361133-16362104,
           16362211-16362398,16362564-16363942,16364024-16365047,
           16365171-16365566,16367484-16367999,16368085-16368226,
           16369409-16369553,16371351-16371432,16371851-16371895,
           16372018-16372140
          Length = 1762

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 394 QRITKLEEEKYDREMEVARKGLEISDLNSQVN 489
           Q + + EE+K +R M+V R   E+ +L SQ+N
Sbjct: 686 QHLRRSEEQKRERNMQVERMKSEMYNLQSQLN 717


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 337 KNIDDANEAALTSIITGYHQRITKLEEEKYDREMEVARKGLEIS 468
           K I D +  A TS+ITGY + +  +    +D  +++ +  LE++
Sbjct: 88  KEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGNLEVN 131


>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 315 RGEVR*T*EH*R-RQRSRSDEHHYGLPSAYHQARRGEVRSRDGSGAQRARDLRPELPSQR 491
           R  VR   EH   ++R R       + S   +A    VRSRDG+G  +A  ++ E  ++R
Sbjct: 546 RASVREKLEHLAIKERQRGRRRERTMSSRGSRATSTPVRSRDGNGKGKAAMVQCESETER 605

Query: 492 PQ 497
            Q
Sbjct: 606 SQ 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,578
Number of Sequences: 37544
Number of extensions: 223724
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)