Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H24
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 342 H*RRQRSRSDEH-HYGLPSAYHQARRGEVRSRDGSGAQRARDLRPELP 482
           H    +++S +H HY  P    ++    V S   SGAQ A    P  P
Sbjct: 352 HHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPP 399


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 572 AFFWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 465
           +F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 314 SFGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 454 LCAPLPSRDRTSPLLAW*YADG 389
           LC P P  +  SPLL+    DG
Sbjct: 46  LCLPAPRINSKSPLLSCACPDG 67


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 454 LCAPLPSRDRTSPLLAW*YADG 389
           LC P P  +  SPLL+    DG
Sbjct: 46  LCLPAPRINSKSPLLSCACPDG 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,374
Number of Sequences: 438
Number of extensions: 2197
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)