Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H23
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   1.2  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       24   4.9  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    23   8.6  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 127 DALRSNEKTRERDDEKCXMFEDDKDLKRLTRPETVHK 17
           D LR N K+   DDE+  + E + D+K+L R E + K
Sbjct: 395 DLLRENLKSY--DDEEAILSEKNTDMKKLERIEGLVK 429


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 115 SNEKTRERDDEKCXMFEDDKDLKRLTRPETVHKRPAK 5
           S E+ R+RD  +   F+DD D +       + + P++
Sbjct: 149 SRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSR 185


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 31  PALSIASNLCHLQTXN 78
           PAL IAS  CH+ + N
Sbjct: 328 PALDIASGNCHITSQN 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,115
Number of Sequences: 5004
Number of extensions: 7124
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)