Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H14
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    73   6e-14
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.1  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   3.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   3.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   4.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.6  

>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
 Frame = +3

Query: 426 PDMVFPKNRLTLAHKSGASINFNPLDALKRVASTVEPV-EVSCSEVWMQAR--PYAE-KL 593
           P+M F  N +++ +K+   + F   DALK V +  E V +VS ++ W ++R  P  E  +
Sbjct: 39  PEMTFGNNYISIEYKNQPVVGFFTEDALKMVGTKPEDVMQVSFAKDWAKSRIKPGEEYPV 98

Query: 594 KKSFDWTFCTDYKGSIS-DNITVWETEESIDFELLKQKNQILFYHDLTLFEDELHDHGVS 770
              FDWT+ TDY+G+I   N    E ++ I  + +    Q L+++++ LFEDEL D+G S
Sbjct: 99  IYPFDWTYYTDYQGTIQRPNAKFIEIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKS 158

Query: 771 KLSVKIXVMPSY 806
              V+  V+  +
Sbjct: 159 MFDVRARVVQGH 170


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 585 EKLKKSFDWTFCTDYKGSISDNITVWETEESIDFELLKQKNQILFYH 725
           E LKK F        KG +   +TV    E +DF L  +K  I FYH
Sbjct: 117 EMLKKEFARVEAAKEKGHMQF-LTVENEREVMDFTLSSKKVVIHFYH 162


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 247 LMPVVIRLIRSPLNL---VLGIFRMMSAVYYPVCVPLRWFAREMTTNFVS 387
           L+P+V RLIR P NL     GI+ ++ A    +C  +   A ++  N +S
Sbjct: 196 LLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 318 SRILPSMCATKVVCERDDDQFCQFCTYSKELKIPHFPDM-VFPKNRLTLAHKSGASINFN 494
           S I+PS+  +K++ + DDD   +   ++++  I  FPD+   PK   +    + +SI  +
Sbjct: 158 SNIVPSINESKILEQEDDDVSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSSTVSSIAPS 217

Query: 495 PLDA 506
            L+A
Sbjct: 218 TLEA 221


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +3

Query: 429 DMVFPKNRLTLAHKS-GASINFNPLDALKRVASTVEPVEVSCSEVWMQARPYAEKLKKSF 605
           DM+   N   L H +    I FN   AL+ +  +   +      +    RPY E  K   
Sbjct: 486 DMIEKSNFKRLEHVTVRVCIPFNRRGALEILLESPSGIR----SILASERPYDENSKGFL 541

Query: 606 DWTFCT 623
           DWTF T
Sbjct: 542 DWTFMT 547


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 603 FDWTFCTDYKGSISDNITVWETEESIDFELLKQKNQILFYHDLT---LFEDELHDHGVSK 773
           FD  F    +G +S  + V     ++ F+ L     ++ Y  L    LF D   DH V  
Sbjct: 601 FDLKFWKRLRGLLS-KLYVVPFNRNLLFKRLMGIRFVIHYRSLATAFLFADREPDHSVMF 659

Query: 774 LSVKIXVMPS 803
           LSV+    PS
Sbjct: 660 LSVQFFTTPS 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,826
Number of Sequences: 5004
Number of extensions: 66370
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)