Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H14
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0041 - 31242524-31242628,31243219-31243260,31243363-312434...    87   2e-17
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168...    32   0.62 
04_04_0393 - 24894170-24894676,24895956-24896627,24897720-248979...    31   0.82 
01_06_0892 + 32763195-32764149,32764489-32764575,32764665-327648...    29   5.8  
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985...    28   7.6  

>03_06_0041 -
           31242524-31242628,31243219-31243260,31243363-31243422,
           31243567-31243674,31243792-31243882,31244223-31244408,
           31245088-31245236
          Length = 246

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 17/153 (11%)
 Frame = +3

Query: 396 YSKELKIPHFPDMVFPKNRLTLAH-KSGASINFNPLDALKRVA-STVEPVEVSCSEVWMQ 569
           +  +L+  H P+MVF ++ L+L H ++G  + FN LDALK      + PVEV  +  W  
Sbjct: 51  FEDKLQTTHLPEMVFGESFLSLQHAQTGIRLYFNALDALKAWKHEALPPVEVPAAAKWKF 110

Query: 570 ARPYAEKLKKSFDWTFCTDYKGSIS-----DNITV---------WE-TEESIDFELLKQK 704
               ++++   +D+TF T Y GS +     D+I           WE +E+ ID   L  K
Sbjct: 111 RSKPSDQVILDYDYTFTTPYNGSDALVQNPDSIQTSLDEPRNLCWEDSEDRIDLVALSAK 170

Query: 705 NQILFYHDLTLFEDELHDHGVSKLSVKIXVMPS 803
             ILFY ++ L+EDEL D+G+S L+V++ VMP+
Sbjct: 171 EPILFYDEVILYEDELADNGISFLTVRVRVMPT 203


>06_03_1168 - 28114656-28114721,28114800-28114889,28115139-28116877,
            28117146-28117227,28117794-28117865,28119412-28119453,
            28120352-28120401,28121253-28121372,28121635-28121707,
            28121828-28122100,28122413-28122517,28122730-28122859,
            28123106-28123356,28123787-28123993,28124185-28124455,
            28124808-28124914
          Length = 1225

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 712  IWFFCFNSSKSIDSSVSQTVI 650
            IWFFCF+S  SID  +S  V+
Sbjct: 1011 IWFFCFSSVNSIDDLISSDVL 1031


>04_04_0393 -
           24894170-24894676,24895956-24896627,24897720-24897956,
           24898852-24899388,24899612-24899662,24900756-24900767
          Length = 671

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 489 FNPLDALKRVASTVEPVEVSCSEVWMQA 572
           FN +DA KR+   V PV VSCS++ + A
Sbjct: 226 FNVIDAAKRLLEAVCPVTVSCSDILVLA 253


>01_06_0892 +
           32763195-32764149,32764489-32764575,32764665-32764829,
           32764904-32766219
          Length = 840

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +3

Query: 513 RVASTVEPVEVSCSEVWMQARPYAEKLKKSFDWTFCTDYKGSISDNITVWE-TEESIDFE 689
           R+ + +EP E  CS           ++ KS D   C     SI +  +V + T  S D  
Sbjct: 156 RMITELEPAEAVCSPKICTDYSILHQVDKSLDKDICHQSDHSIHERYSVLQMTSGSEDEA 215

Query: 690 LLKQKNQILFYHDLTLFEDELHDHGVSK 773
                 +I  +H     E++L++   ++
Sbjct: 216 PCADDGKISHHHKTNCMEEDLNEDATAE 243


>03_06_0257 -
           32697469-32697520,32698183-32698301,32698536-32698556,
           32698903-32698979,32699331-32699477,32699561-32699721,
           32700320-32700522
          Length = 259

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 243 NVDAGRHTSNSQSIEFGPWHISYD-VSRILPSMCATKVVCERDDDQFCQFCTYSKELK 413
           N+  G+H ++  SIE GP+   Y  V  I+        +C+R   +   F  Y ++LK
Sbjct: 42  NLSKGQHEASRMSIETGPYFFQYPYVLYIIEGRVCYLTMCDRSYPKKLAF-QYLEDLK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,244
Number of Sequences: 37544
Number of extensions: 368108
Number of successful extensions: 850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)