Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H13
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    30   0.36 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    30   0.48 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    29   1.1  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    28   1.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   1.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.4  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    27   4.4  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +3

Query: 321 PSYAPPISSADPYSAAGYYGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAK 500
           PSY+   ++A+ YS+  Y      ++T  S+  +G   S+ NY    G  +T+G  G + 
Sbjct: 31  PSYSVGGTTANSYSSNSYNDNNNSNSTYGSSNNYGNYGSSNNY-GSYGASNTYGSNGSSN 89

Query: 501 QYDDY 515
            Y +Y
Sbjct: 90  NYGNY 94


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 249 APKEQHLESGGDELAEVPWRHQQ 317
           +P    LES  ++L EVPW+H Q
Sbjct: 320 SPNRAELESTPEQLLEVPWQHHQ 342


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 360 SAAGYYGVFGPSTTPFSTAAFGQPASTFNYFHGNGDY--STWGQ 485
           S  GY    GP  TP+   A  + +S  ++  G+ ++  STW Q
Sbjct: 134 SIPGYASGSGPFKTPYRPVAVSESSSRSSFSMGSSEFASSTWSQ 177


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 669 PKSSFWVVKLKRYL*ALVDGPCPVCGHQG 583
           PK  F+V +  R       G CP+C HQG
Sbjct: 217 PKDDFYVPRFTRGHGISKLGLCPICSHQG 245


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 291  AEVPWRHQQQPSYAPPISSADPYSAAGYYGVFGPSTTPFSTAAFGQPA 434
            A  P++  Q P Y  P SSA    + G YG+  PS +P S      PA
Sbjct: 1527 AASPYKGVQSPGYTSPFSSA---MSPG-YGLTSPSYSPSSPGYSTSPA 1570


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 378 GVFGPSTTPFSTAAFG 425
           G+FG STTP +T AFG
Sbjct: 148 GLFGSSTTPATTNAFG 163


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 333 PPISSADPYSAAGYYGVFGPSTTPFSTAAFGQPASTF 443
           P  S   P SAA     FG +T PFS AA   P S+F
Sbjct: 367 PASSDVKPPSAAAVGFSFGTTTNPFSFAA---PKSSF 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,301
Number of Sequences: 5004
Number of extensions: 69042
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)