Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H13
(849 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1064 - 33842970-33843344,33843596-33843641,33844124-338441... 31 1.5
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 30 2.0
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 30 2.7
12_01_0060 - 499291-501228 29 3.5
05_04_0260 + 19501643-19503010 29 3.5
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 28 8.2
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 28 8.2
05_05_0207 + 23272777-23272977,23273831-23275330 28 8.2
03_01_0320 - 2510907-2512190 28 8.2
01_06_1155 - 34957402-34957824 28 8.2
>02_05_1064 -
33842970-33843344,33843596-33843641,33844124-33844176,
33844255-33844512,33845245-33845430,33845862-33845903,
33846598-33846741
Length = 367
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +3
Query: 339 ISSADPYSAAGYYGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQL--GRAKQYDD 512
+ + DP ++ +G + TP P+S F+Y GDY+ WG G D
Sbjct: 240 METQDP-KTENWWLAYGSNNTPIGY----WPSSQFSYLKAKGDYAFWGGYVQGPIAASDP 294
Query: 513 YYRADGLYVPDGV-KTVEAGVQALSLGDHKQDKDRQPELKDISSVSQPKKM 662
G + +G KT ++ + + + K +K P ++D S K+
Sbjct: 295 PQMGSGHFASEGFGKT--TFIRNIQVIEDKNNKLVTPNIRDSDPFSSDPKL 343
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 342 SSADPYSA-AGYYGVFGPSTT-PFSTAAFGQPASTFNYFHGNGDYST 476
+S++P+ A G +G +TT PF+ FG P + F GN + T
Sbjct: 19 TSSNPFGAQTGGFGQANTTTTNPFAPKPFGSPITAFGAQTGNSPFGT 65
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1
Query: 349 PTPTARQVITVCLDLQ----LLHSQQRHLDNLPPPSTI-FTATVT 468
P+ T V+T L L LLH QR D +P PST+ +TA +T
Sbjct: 886 PSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALIT 930
>12_01_0060 - 499291-501228
Length = 645
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1
Query: 349 PTPTARQVITVCLDLQ----LLHSQQRHLDNLPPPSTI-FTATVT 468
P+ T V+T L L LLH QR D +P PST+ +TA +T
Sbjct: 101 PSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALIT 145
>05_04_0260 + 19501643-19503010
Length = 455
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 402 PFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDDYYRADGLYVPDGVKTVEAGVQAL 581
P STA +G+ T YF G G++ R K D + G+ V V A + A+
Sbjct: 246 PVSTAPYGRKDKTTKYFIGETTIQLKGRVWREKSTDYFIGLTGIKVNGHTVPVNATLLAI 305
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/52 (40%), Positives = 22/52 (42%)
Frame = +3
Query: 225 GQGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGYYG 380
G G P Q SGG A + P APP SSA PY A G YG
Sbjct: 57 GGGGGYGAPPSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSA-PYGAPGGYG 107
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 336 PISSADPYSAAGYYGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDDY 515
P+ YSA+G YG G S +G ++ +G+G Y W L K Y+
Sbjct: 305 PLGPPSIYSASGMYGYNGSS--------YGSGLWYGSHLYGSGLYGGWNALSDGK-YNPR 355
Query: 516 YRADGLY 536
R +G Y
Sbjct: 356 GRGNGSY 362
>05_05_0207 + 23272777-23272977,23273831-23275330
Length = 566
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 204 VSDQRMKGQGNQVTNAPKEQHLES----GGDELAEVPWRHQQQPSYAPP 338
V+ + M G+G T++P E ++ GG L+ PWRH P PP
Sbjct: 13 VAARAMPGRGEVDTSSPFESVRQAVDLFGGGALS--PWRHHHPPPPPPP 59
>03_01_0320 - 2510907-2512190
Length = 427
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 216 RMKGQGNQVTN--APKEQHLESGGDELAEVPWR-HQQQPSYAPPISSADPYSA 365
R++G +Q+T A E HL +G ++ A WR +Q+Q S+ + Y A
Sbjct: 206 RLRGPASQITAMLAEDEDHLFAGAEDGAVFMWRMNQEQQSFDEVAALTGHYKA 258
>01_06_1155 - 34957402-34957824
Length = 140
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 213 QRMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQQPSYAPPISS 347
++++ QG+ T +E+ GD+ PW P APP+ S
Sbjct: 46 RQIRRQGHSTTKVGQERRAAGWGDDEERWPWEETGLPG-APPLRS 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,625,301
Number of Sequences: 37544
Number of extensions: 518575
Number of successful extensions: 1612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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