Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H13
(849 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein prot... 33 0.99
BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein. 33 0.99
AB209366-1|BAD92603.1| 493|Homo sapiens far upstream element-bi... 33 0.99
BC052970-1|AAH52970.1| 585|Homo sapiens YTH domain family, memb... 33 1.7
AK093081-1|BAC04046.1| 534|Homo sapiens protein ( Homo sapiens ... 33 1.7
AK056219-1|BAB71122.1| 543|Homo sapiens protein ( Homo sapiens ... 33 1.7
U60477-1|AAB09475.1| 414|Homo sapiens apoliprotein AI regulator... 31 4.0
M64497-1|AAA86429.1| 414|Homo sapiens apolipoprotein AI regulat... 31 4.0
M62760-1|AAA21479.1| 351|Homo sapiens ovalbumin upstream promot... 31 4.0
BC042897-1|AAH42897.1| 414|Homo sapiens nuclear receptor subfam... 31 4.0
BC014664-1|AAH14664.1| 414|Homo sapiens nuclear receptor subfam... 31 4.0
U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen pro... 30 9.2
AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderm... 30 9.2
>U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein
protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.99
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +3
Query: 303 WRHQQQPSYAPPISSADPYSAA--GYYG-VFGPSTTPFSTAAFGQPASTFNYFHGNGDYS 473
W+ Q P P + DP SAA YY + P A G P +T +G GD
Sbjct: 517 WQQQAPPD--PAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQT--NGQGDQQ 572
Query: 474 T---WGQLGRAKQYDDYYRADGLYVP 542
GQ+ K +++YY+ G VP
Sbjct: 573 NPAPAGQVDYTKAWEEYYKKMGQAVP 598
>BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein.
Length = 653
Score = 33.5 bits (73), Expect = 0.99
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +3
Query: 303 WRHQQQPSYAPPISSADPYSAA--GYYG-VFGPSTTPFSTAAFGQPASTFNYFHGNGDYS 473
W+ Q P P + DP SAA YY + P A G P +T +G GD
Sbjct: 516 WQQQAPPD--PAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQT--NGQGDQQ 571
Query: 474 T---WGQLGRAKQYDDYYRADGLYVP 542
GQ+ K +++YY+ G VP
Sbjct: 572 NPAPAGQVDYTKAWEEYYKKMGQAVP 597
>AB209366-1|BAD92603.1| 493|Homo sapiens far upstream
element-binding protein variant protein.
Length = 493
Score = 33.5 bits (73), Expect = 0.99
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +3
Query: 303 WRHQQQPSYAPPISSADPYSAA--GYYG-VFGPSTTPFSTAAFGQPASTFNYFHGNGDYS 473
W+ Q P P + DP SAA YY + P A G P +T +G GD
Sbjct: 367 WQQQAPPD--PAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQT--NGQGDQQ 422
Query: 474 T---WGQLGRAKQYDDYYRADGLYVP 542
GQ+ K +++YY+ G VP
Sbjct: 423 NPAPAGQVDYTKAWEEYYKKMGQAVP 448
>BC052970-1|AAH52970.1| 585|Homo sapiens YTH domain family, member
3 protein.
Length = 585
Score = 32.7 bits (71), Expect = 1.7
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 378 GVFGPSTTPFSTAAF-GQPASTFNYFHGNGDYSTWGQLGRAKQ 503
GVF +T F GQ FN+F GN D+STWG G Q
Sbjct: 104 GVFSQPGALGNTPPFLGQHG--FNFFPGNADFSTWGTSGSQGQ 144
Score = 31.9 bits (69), Expect = 3.0
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Frame = +3
Query: 192 MSAGVSDQRMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQ--QPSYAPPISSADPYSA 365
MSA DQR KGQGN+V+ H + ++ P+ Q Q + PP+S DPY
Sbjct: 1 MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMS--DPYMP 58
Query: 366 AGYYGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDDYYRADGLYVPD 545
+ Y G P+S G+ A + +T+GQ+ + +Y DG++
Sbjct: 59 SYYAPSIG---FPYS---LGEAAWSTAGDQPMPYLTTYGQMSNG---EHHYIPDGVFSQP 109
Query: 546 G 548
G
Sbjct: 110 G 110
>AK093081-1|BAC04046.1| 534|Homo sapiens protein ( Homo sapiens
cDNA FLJ35762 fis, clone TESTI2004793, moderately
similar to Homo sapiens NY-REN-2 antigen mRNA. ).
Length = 534
Score = 32.7 bits (71), Expect = 1.7
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 378 GVFGPSTTPFSTAAF-GQPASTFNYFHGNGDYSTWGQLGRAKQ 503
GVF +T F GQ FN+F GN D+STWG G Q
Sbjct: 53 GVFSQPGALGNTPPFLGQHG--FNFFPGNADFSTWGTSGSQGQ 93
>AK056219-1|BAB71122.1| 543|Homo sapiens protein ( Homo sapiens
cDNA FLJ31657 fis, clone NT2RI2004304, moderately
similar to Homo sapiens NY-REN-2 antigen mRNA. ).
Length = 543
Score = 32.7 bits (71), Expect = 1.7
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 378 GVFGPSTTPFSTAAF-GQPASTFNYFHGNGDYSTWGQLGRAKQ 503
GVF +T F GQ FN+F GN D+STWG G Q
Sbjct: 104 GVFSQPGALGNTPPFLGQHG--FNFFPGNADFSTWGTSGSQGQ 144
Score = 31.9 bits (69), Expect = 3.0
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Frame = +3
Query: 192 MSAGVSDQRMKGQGNQVTNAPKEQHLESGGDELAEVPWRHQQ--QPSYAPPISSADPYSA 365
MSA DQR KGQGN+V+ H + ++ P+ Q Q + PP+S DPY
Sbjct: 1 MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMS--DPYMP 58
Query: 366 AGYYGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDDYYRADGLYVPD 545
+ Y G P+S G+ A + +T+GQ+ + +Y DG++
Sbjct: 59 SYYAPSIG---FPYS---LGEAAWSTAGDQPMPYLTTYGQMSNG---EHHYIPDGVFSQP 109
Query: 546 G 548
G
Sbjct: 110 G 110
>U60477-1|AAB09475.1| 414|Homo sapiens apoliprotein AI regulatory
protein-1 protein.
Length = 414
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 DELAEVPWRHQQQPSYAPPISSADPYS--AAGYYGVFGPSTTPFSTAAFGQ 428
D EVP Q S APP+ P + G GP++TP TAA GQ
Sbjct: 10 DPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 60
>M64497-1|AAA86429.1| 414|Homo sapiens apolipoprotein AI regulatory
protein-1 protein.
Length = 414
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 DELAEVPWRHQQQPSYAPPISSADPYS--AAGYYGVFGPSTTPFSTAAFGQ 428
D EVP Q S APP+ P + G GP++TP TAA GQ
Sbjct: 10 DPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 60
>M62760-1|AAA21479.1| 351|Homo sapiens ovalbumin upstream promoter
transcription factor II protein.
Length = 351
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 DELAEVPWRHQQQPSYAPPISSADPYS--AAGYYGVFGPSTTPFSTAAFGQ 428
D EVP Q S APP+ P + G GP++TP TAA GQ
Sbjct: 10 DPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 60
>BC042897-1|AAH42897.1| 414|Homo sapiens nuclear receptor subfamily
2, group F, member 2 protein.
Length = 414
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 DELAEVPWRHQQQPSYAPPISSADPYS--AAGYYGVFGPSTTPFSTAAFGQ 428
D EVP Q S APP+ P + G GP++TP TAA GQ
Sbjct: 10 DPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 60
>BC014664-1|AAH14664.1| 414|Homo sapiens nuclear receptor subfamily
2, group F, member 2 protein.
Length = 414
Score = 31.5 bits (68), Expect = 4.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 DELAEVPWRHQQQPSYAPPISSADPYS--AAGYYGVFGPSTTPFSTAAFGQ 428
D EVP Q S APP+ P + G GP++TP TAA GQ
Sbjct: 10 DPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ 60
>U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen
protein.
Length = 372
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 456 GNGDYSTWGQLGRAKQYDDYYRADGLYVPDGVKTVEAGVQALSLGDHK 599
G G ++WG L +++ DD D + DG+K ++ GV+ +G +
Sbjct: 256 GEGVENSWGDLEDSEKEDDEGGGDQAIILDGIK-MDTGVEVSDIGSQE 302
>AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 456
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 456 GNGDYSTWGQLGRAKQYDDYYRADGLYVPDGVKTVEAGVQALSLGDHK 599
G G ++WG L +++ DD D + DG+K ++ GV+ +G +
Sbjct: 340 GEGVENSWGDLEDSEKEDDEGGGDQAIILDGIK-MDTGVEVSDIGSQE 386
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,498,821
Number of Sequences: 237096
Number of extensions: 2747796
Number of successful extensions: 6502
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6486
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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