Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H13
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.17 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
 Frame = +3

Query: 252  PKEQHLESGGDE----LAEVPWRHQQQPSYAPPISSADPY 359
            P  +H+ S  D     L    WR QQ P   PP SS   Y
Sbjct: 1329 PLSEHIYSSIDSDYSTLERTAWRQQQPPPPPPPPSSGQAY 1368


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 10  DELRTFYVGCYVNFCTLRTFLTLFGDSHIC---KTQCSE 117
           D LR  Y  C+++  +  T  ++F  SHI    +TQC +
Sbjct: 39  DRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKK 77


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 10  DELRTFYVGCYVNFCTLRTFLTLFGDSHIC---KTQCSE 117
           D LR  Y  C+++  +  T  ++F  SHI    +TQC +
Sbjct: 39  DRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKK 77


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 336 PISSADPYSAAGYYGVFGPSTTPFSTAAFGQ 428
           P+++   YS    +G++  +T PF  + FG+
Sbjct: 258 PVTNNLYYSPLASHGLYYVNTAPFMKSQFGE 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,529
Number of Sequences: 438
Number of extensions: 5349
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)