Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H10
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 97 2e-21
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 30 0.34
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 1.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.2
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 27 4.2
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 5.5
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 26 5.5
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 9.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 9.6
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 97.5 bits (232), Expect = 2e-21
Identities = 75/206 (36%), Positives = 102/206 (49%), Gaps = 4/206 (1%)
Frame = +3
Query: 201 DAVVEQDTLWRKLRHEADNFNKLKNVCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLT 380
D V+E W LR E DN NK N KEIGLKMK KE + SE+ +LT
Sbjct: 33 DKVIEMYKEWVSLRFELDNTNKSINRVQKEIGLKMKAKEDA--------SELLEEKNSLT 84
Query: 381 GDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLHESVPVDDDEDH 560
++ + LI+ +KN E L + +GN +H+SVPV DED+
Sbjct: 85 ------------ERKKNLIEQETAKNKEML--------NVVSSIGNIVHDSVPVSMDEDN 124
Query: 561 NLVERTDGDCGF--RKK--YSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVFLXQALV 728
N + R G KK SH +++ +DG D ERG V+G RGY+L+ VF AL+
Sbjct: 125 NEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLRQYGVFFNLALI 184
Query: 729 QLSLXMLLEKGYTPLYTPFFMRKEVM 806
Q L L ++GY L P + K+VM
Sbjct: 185 QYGLDFLEKRGYIALQAPTMLNKDVM 210
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +2
Query: 104 VLDLDLFRADKDGNPDKIRENQKKRFKDVAL 196
+LD++LF+ +K GNP+ IRE+Q+KR DV +
Sbjct: 1 MLDINLFQVEKGGNPEIIRESQRKRGADVGV 31
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 288 EIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK 419
EIG K K+K P+ E P I+ L +L G+N PL + Q K
Sbjct: 16 EIGNKQKSKTPT----ERRPEGISRELYSLLGENSAPLAIYQKK 55
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.0 bits (52), Expect(2) = 1.5
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 333 DEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKAR 491
DE +P+E+ TGD LKP+T Q+ + L AI+K ++ A+
Sbjct: 199 DENIPAELHTT----TGDILKPITPEQLSQGIAL---AIAKTSTDIVVENAAQ 244
Score = 21.4 bits (43), Expect(2) = 1.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +3
Query: 600 KKYSHVDLICMIDGMDGERGSAVAGGR 680
+ ++ L+C++ G +AVA GR
Sbjct: 263 RNHNSQPLVCILVGSHDHASAAVAAGR 289
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +3
Query: 489 RSAALR----EVGNHLHESVPVDDDEDHNLVERTDGDCGFRKK 605
RS+ LR + N++ E + + D DH + ER G G RKK
Sbjct: 1203 RSSVLRLFPADDANYVSEVLDIPDSLDHEIQERPFGLAGKRKK 1245
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -2
Query: 367 RLLAISEGTGSSSEPLGSLFFIFKPISLLHTFFSLLKLSASWRNFLHKVS 218
+ L +S+G+ + S +F+ I + + S +W +FLH S
Sbjct: 376 KALLLSDGSRIMDADVASRYFLLADIQWQRVCYKSFRESRTWLHFLHNFS 425
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 588 CGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 701
CG K+YS V ++ +DG++G V+GG+ L P
Sbjct: 1116 CGVIKEYSTVVVMGSLDGVEGS-DETVSGGQRLSLDRP 1152
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 213 RRLHPXRATSLNLFF*FSRILSGLPSLSARNKSKS 109
+RL+ R++ +++ R L GLPSLS RN KS
Sbjct: 114 KRLNRSRSSKEDMYR--RRSLHGLPSLSRRNSKKS 146
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 641 NGWREGISCSRWSWLLSKRSCSIPXTSPRSTFS 739
N WRE I S WS L+ R + + S FS
Sbjct: 47 NTWREAIETSAWSGKLNSRIILVFDETFESAFS 79
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 384 DNLKPLTVNQIKKVRVLIDNAISKNDEG--LLAAEKARSAALRE 509
+ +P+T N +KK + ++ A K + AA AR+AA +E
Sbjct: 62 EEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAARAAAAKE 105
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +3
Query: 258 FNKLKNVCSKEI------GLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPL 401
F +LK++ + EI GL+ K+ SG V S+ N +VN+ ++K L
Sbjct: 226 FRRLKDIGNPEIRMMLDSGLRDWRKQRSGRSSSHVASKGINKVVNINPGDVKSL 279
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 307 FIFKPISLLHTFFSLLKLSASWRNFLHKVSCSTTASXKGN 188
++ KP S+ + F ++SW + KV+C S + N
Sbjct: 6 YLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENN 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,626
Number of Sequences: 5004
Number of extensions: 60666
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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