Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_F_H09
(795 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 157 7e-51
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 34 0.12
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 1.4
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 28 7.6
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 7.6
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 7.6
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 157 bits (380), Expect(2) = 7e-51
Identities = 76/114 (66%), Positives = 94/114 (82%)
Frame = +2
Query: 188 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 367
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 368 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 529
+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 62.5 bits (145), Expect(2) = 7e-51
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +2
Query: 641 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 742
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 34.3 bits (75), Expect = 0.12
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%)
Frame = +2
Query: 152 VYLFPSRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIE 331
+ L +R + S K D ++ + + + + K L+E+ I ++K+ E
Sbjct: 221 ISLLETRSTIARSPKHDDEKDNSGDDIDSDKEDSSGDAPHHEEKKEDLKEVVIKQSKQDE 280
Query: 332 ---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-----GKHVVFVGDRKILPKPS 487
+ + KS PKLKA Q + + KK K V+ LP+ +
Sbjct: 281 ATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKPVKRAKKVLNKKKMDTLPRGA 340
Query: 488 HKTRVANKQKRPRS 529
H+ AN Q+RP++
Sbjct: 341 HRPASANAQRRPQN 354
>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +2
Query: 125 FRKLMATLVVYLFPSRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQ--LR 298
FR+ +A LVV+ PS+ +K I+ GAE E + + + L+T LK + LR
Sbjct: 356 FRENIAALVVFYTPSKADMK---AILHDYGAELS--EERMKEYMKALKTKKFLKLEFCLR 410
Query: 299 ELY-ITKAKEIELHNKKSI--IIYVPMPKLKAF 388
Y I + + LH+++ I+ P+ L++F
Sbjct: 411 HFYTIALVERVRLHHQQRAPHIVRKPVSTLRSF 443
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.7 bits (66), Expect = 1.4
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = +2
Query: 179 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 340
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 341 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 514
K + +YV M KL++ Q ELEK+ ++ ++I P K S T VA +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 726 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASY 547
T+R ++ ++DW ++ C CW +S T+ S LT +++P + + K A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 116 DGSFRKLMATLVVYLFPSRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQL 295
D S L++ VY + VK+S + ++ + AD+ +T S L++ E ++ +
Sbjct: 175 DKSGDGLLSIDEVYFLMHKLNVKISNRQVRENFKAADT-DTVNSSGLLDFEEFANFYKSI 233
Query: 296 ---RELYITKAKEIELHNKKSI 352
RELY+ K + LH+ S+
Sbjct: 234 STRRELYMLLLKRLNLHHLMSL 255
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 224 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 391
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 276 PTSKPNFGSFTLQKLKKLNYTIRS 347
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,064,552
Number of Sequences: 59808
Number of extensions: 437969
Number of successful extensions: 1332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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