Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_F_H06
         (498 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9LUD6 Cluster: Similarity to salt-inducible protein; n...    34   2.0  
UniRef50_Q0AZY0 Cluster: Molecular chaperone-like protein; n=1; ...    33   2.7  
UniRef50_A5FTG0 Cluster: Phage integrase domain protein SAM doma...    32   6.2  
UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymeras...    32   8.2  

>UniRef50_Q9LUD6 Cluster: Similarity to salt-inducible protein; n=3;
           core eudicotyledons|Rep: Similarity to salt-inducible
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 405

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 179 AQRYDEIESRQRCFMMQKDCFIGKIFFLEKKKEFGNICRLRINFKTVAPYA-PSSSCW 349
           A+ YDEIE   R   ++K C   + FF    + +GN+   RIN      +  P   CW
Sbjct: 108 AKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAG-RINRAIEILFGMPDFGCW 164


>UniRef50_Q0AZY0 Cluster: Molecular chaperone-like protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Molecular chaperone-like protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 569

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 367 TLSAYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQK 257
           T++AYLP+ RR C    + +ID   A+ A FF L  K
Sbjct: 36  TVAAYLPSQRRLCFGPLALRIDEAGAETAFFFKLALK 72


>UniRef50_A5FTG0 Cluster: Phage integrase domain protein SAM domain
           protein; n=2; Acidiphilium cryptum JF-5|Rep: Phage
           integrase domain protein SAM domain protein -
           Acidiphilium cryptum (strain JF-5)
          Length = 375

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -3

Query: 370 STLSAYLPATRRWCIWCYSFKIDP---KSADVAKFFLLFQKENFAYKTILLHHKA 215
           +T  AY  A R WC+WC    + P     ADVA F    +    + +T+ L   A
Sbjct: 72  NTRRAYRAAVRVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETLKLRRAA 126


>UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymerase
           III; n=1; Bigelowiella natans|Rep: Second-largest
           subunit of RNA polymerase III - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 1074

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 319 YSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAALSTFYFIIALCLII 170
           ++F++  K++ + K F+ + K+ F YK I+   K  LS+  F   + LII
Sbjct: 178 FNFRLYKKNSVITKLFMKYYKKIFKYKIIINKSKFTLSSNLFNSEIDLII 227


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,387,569
Number of Sequences: 1657284
Number of extensions: 7647828
Number of successful extensions: 17445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17439
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)